PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02277-augustus-gene-0.8-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family RAV
Protein Properties Length: 330aa    MW: 37222.9 Da    PI: 6.6651
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02277-augustus-gene-0.8-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-114491154
                                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                                                  s++kGV    ++g W A+I+       + +r++lg+f t++eAa a++ a+ kl+
  maker-scaffold02277-augustus-gene-0.8-mRNA-1 44 SKFKGVV-PQQNGHWGAQIYA------NhRRIWLGTFKTEKEAAMAYDSAAIKLR 91
                                                  799***6.666899****999......44**********99************98 PP
2B390.41.3e-28166262185
                                                   EEEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE.. CS
                                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliy 52 
                                                   f+k ltpsdv++++rlv+pkkfa ++             gg+ +e ++l+++d+  rsW+++++y
  maker-scaffold02277-augustus-gene-0.8-mRNA-1 166 FQKDLTPSDVGSLNRLVIPKKFAVKYfpcisetaevnegGGN-KEAVQLIFYDRMMRSWKFRYCY 229
                                                   89************************************6555.4779****************** PP

                                                   EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                                            B3  53 rkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                                                   +k+s+++v+t+GW++Fvk+++Lk++D++ F+l 
  maker-scaffold02277-augustus-gene-0.8-mRNA-1 230 WKSSQSFVFTRGWNRFVKEKKLKANDTISFYLC 262
                                                   *******************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-64491IPR001471AP2/ERF domain
CDDcd000181.12E-2444102No hitNo description
SuperFamilySSF541717.85E-1644101IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-1745100IPR001471AP2/ERF domain
PROSITE profilePS5103217.63545100IPR001471AP2/ERF domain
SMARTSM003802.8E-2045106IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.7E-33161266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-28164265IPR015300DNA-binding pseudobarrel domain
CDDcd100174.29E-26165261No hitNo description
PROSITE profilePS5086313.422166282IPR003340B3 DNA binding domain
SMARTSM010192.0E-20166280IPR003340B3 DNA binding domain
PfamPF023621.6E-25166263IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEDDMLSMIS NGGVNATAED SDSSSTTYPF PESKRARHGS NASSKFKGVV PQQNGHWGAQ  60
IYANHRRIWL GTFKTEKEAA MAYDSAAIKL RSGDSQRNFP WTDITVEEPS FQNLYSTEAV  120
LIMIKEGSYQ SKFEDFVRTH SHNVESVDLN LGRVQSKGGL SCKQLFQKDL TPSDVGSLNR  180
LVIPKKFAVK YFPCISETAE VNEGGGNKEA VQLIFYDRMM RSWKFRYCYW KSSQSFVFTR  240
GWNRFVKEKK LKANDTISFY LCECQEAAND ARSFNMIDVN SSDNCSSLVE QANQYVGIQL  300
DLKLEVISDF SLDPAMPQSF CLSFVLGGNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A8e-281632745107B3 domain-containing transcription factor NGA1
5os9_B8e-281632745107B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876741.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1
RefseqXP_023876742.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2
RefseqXP_023876743.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2
RefseqXP_023876744.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2
RefseqXP_023876745.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2
RefseqXP_023876746.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2
RefseqXP_023876747.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2
RefseqXP_023876749.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2
RefseqXP_023896329.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1
RefseqXP_023896331.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X1
RefseqXP_023896332.10.0AP2/ERF and B3 domain-containing transcription factor At1g50680-like isoform X2
SwissprotQ9C6881e-104RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2N9G0H70.0A0A2N9G0H7_FAGSY; Uncharacterized protein
STRINGXP_006473975.11e-138(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-106RAV family protein