PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02275-augustus-gene-0.16-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Dof
Protein Properties Length: 371aa    MW: 40880.2 Da    PI: 10.2969
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02275-augustus-gene-0.16-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.94.5e-38124184262
                                         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                                    +e alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWtkGGalr vPvGgg+r+nkk++
  maker-scaffold02275-augustus-gene-0.16-mRNA-1 124 PEVALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTKGGALRSVPVGGGCRRNKKNK 184
                                                    56789*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-33108177IPR003851Zinc finger, Dof-type
PfamPF027013.7E-32127182IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.143128182IPR003851Zinc finger, Dof-type
PROSITE patternPS013610130166IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
QSKQKPLLAF LLLLFNSLFP FLSWLWYSLS VILHHISKRP IKLYKRKKRS KTMVFSSVPV  60
YLDPHNWQQQ PNHHHQQGSH DSAQNPQLLP SLAPPPTHHV GGGACSIRPG SMADRARLAK  120
LPQPEVALKC PRCESTNTKF CYFNNYSLTQ PRHFCKTCRR YWTKGGALRS VPVGGGCRRN  180
KKNKSSRTKS PANSTERQTG CSNSNNAIPA CNSDLSDNLP LKQPFQLPFF ASLQNHTRYG  240
VGNLAGLNFN DIQAQTDMGY QIGNTSGGIS SPILPSGGGV DQWRLHQFPF LGGFDSSSGL  300
YSIQSDHGVE APSPLVGDNE LRTMPMSSSS RVSQLTKMEA SQTQNLSGLN WGGNAWTDIS  360
GLNSSSTSQL L
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023873398.10.0dof zinc finger protein DOF3.6-like
TrEMBLA0A2N9FG661e-143A0A2N9FG66_FAGSY; Uncharacterized protein
STRINGGLYMA12G06880.21e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.13e-42OBF-binding protein 3