PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02216-augustus-gene-0.18-mRNA-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 342aa    MW: 37490.2 Da    PI: 5.4408
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02216-augustus-gene-0.18-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.51.3e-081854440
                                       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40
                                                   + C+++++  +  fC+ ++++lC +C ++ H++H++v
  maker-scaffold02216-augustus-gene-0.18-mRNA-1 18 KLCDTCKSGSAAVFCRVDSVFLCLTCDSKLHSRHERV 54
                                                   68******99************************975 PP

2zf-B_box28.82.5e-095499342
                                       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                                    ++C+ +e+ +++  C+ +   lC +C + +H+       H++vp+
  maker-scaffold02216-augustus-gene-0.18-mRNA-1 54 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplarrHERVPV 99
                                                   689*****************************66899999*99986 PP

3CCT69.96.6e-24268311144
                                            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                                    Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  maker-scaffold02216-augustus-gene-0.18-mRNA-1 268 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 311
                                                    9*****************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.1391556IPR000315B-box-type zinc finger
SMARTSM003368.0E-71556IPR000315B-box-type zinc finger
PfamPF006431.0E-61854IPR000315B-box-type zinc finger
CDDcd000212.72E-81956No hitNo description
PROSITE profilePS5011911.0075299IPR000315B-box-type zinc finger
PfamPF006432.5E-75499IPR000315B-box-type zinc finger
CDDcd000212.33E-95599No hitNo description
SMARTSM003361.7E-105799IPR000315B-box-type zinc finger
PfamPF062035.1E-18268310IPR010402CCT domain
PROSITE profilePS5101716.787268310IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGIEATASSF KTWGVAAKLC DTCKSGSAAV FCRVDSVFLC LTCDSKLHSR HERVWMCEVC  60
EQAPASVTCK ADAAALCVTC DSDIHSANPL ARRHERVPVE PFFDSADSVI KSAAPLTDFL  120
VVPTDHNESP EAGSWVLPNP SFVEDPDVKP TDLLFTAEMD PFLDFEYPNS FHNSGTDSVV  180
PVQAKPVSAP VSETCFDIEF CKSKLSAFNY PSHSLSQSVS SSEVGVVPDG NSMSDISYPF  240
GRNMSVDPNV PVLGTTAQAA TQLCGTDREA RVLRYREKRK NRKFEKTIRY ASRKAYAETR  300
PRIKGRFAKR TEMIESDVDS LFNSVSTAAF ITEAQYGVVP TF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9312202e-47AB931220.1 Rubus palmatus gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: pYK-188_09.
GenBankAB9312312e-47AB931231.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr2-308_09.
GenBankAB9312322e-47AB931232.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr2-310_09.
GenBankAB9312332e-47AB931233.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr2-311_09.
GenBankAB9312352e-47AB931235.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr2-314_09.
GenBankAB9312362e-47AB931236.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr3-279_09.
GenBankAB9312372e-47AB931237.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr3-280_09.
GenBankAB9312382e-47AB931238.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr3-284_09.
GenBankAB9312392e-47AB931239.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr3-292_09.
GenBankAB9312402e-47AB931240.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr3-295_09.
GenBankAB9312412e-47AB931241.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr3-296_09.
GenBankAB9312422e-47AB931242.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr3-300_09.
GenBankAB9312442e-47AB931244.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr4-303-01_09.
GenBankAB9312452e-47AB931245.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr4-303-02_09.
GenBankAB9312462e-47AB931246.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr4-303-04_09.
GenBankAB9312472e-47AB931247.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr4-303-06_09.
GenBankAB9312482e-47AB931248.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr4-303-08_09.
GenBankAB9312492e-47AB931249.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr4-305-06_09.
GenBankAB9312502e-47AB931250.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr4-305-09_09.
GenBankAB9312512e-47AB931251.1 Rubus sp. MM-2014 gene for zinc finger protein CONSTANS-LIKE homolog, partial cds, isolate: sr4-344_09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910553.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-115COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A2N9GQ060.0A0A2N9GQ06_FAGSY; Uncharacterized protein
STRINGEOY317241e-149(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-113CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]