PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02212-snap-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ARR-B
Protein Properties Length: 224aa    MW: 26019.8 Da    PI: 6.5111
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02212-snap-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.33.3e-08194215122
                                    G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                                                k r++W+ +LH++Fv+av+q+G
  maker-scaffold02212-snap-gene-0.24-mRNA-1 194 KHRVVWSVDLHQKFVKAVNQIG 215
                                                68******************97 PP
2Response_reg85.71.4e-28191271109
                                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHH CS
                               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeir 66 
                                                vl+vdD+p+ +++l+++l+k  y +v+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++  
  maker-scaffold02212-snap-gene-0.24-mRNA-1  19 VLVVDDDPTWLKILEKMLKKCAY-DVTTCHLAREALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVG 85 
                                                89*********************.***************999999**********************6 PP

                                                HHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                               Response_reg  67 eeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                                 e  +lp+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  maker-scaffold02212-snap-gene-0.24-mRNA-1  86 LEM-DLPVIMMSVDGETSKVMKGVQHGACDYLLKPIRMKELRN 127
                                                644.8***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.56E-3616139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23004.8E-4516140No hitNo description
SMARTSM004481.7E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.83318133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2519128IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.50E-3020133No hitNo description
Gene3DG3DSA:1.10.10.605.1E-8192218IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MENGFSSPRS ESFPAGLRVL VVDDDPTWLK ILEKMLKKCA YDVTTCHLAR EALNLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSKVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKIHEI RDIEHENIDI IQMSRNGSDL DDGHMYCGED FNSKKRKDFD  180
KNDDKDFGDH STKKHRVVWS VDLHQKFVKA VNQIGFDSKY SINF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ab5_A5e-16171352122CHEY
1ab5_B5e-16171352122CHEY
1ab6_A4e-16171352122CHEMOTAXIS PROTEIN CHEY
1ab6_B4e-16171352122CHEMOTAXIS PROTEIN CHEY
3olv_A5e-16171356126Chemotaxis protein CheY
3olv_B5e-16171356126Chemotaxis protein CheY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023922783.11e-143two-component response regulator ARR11
SwissprotQ5N6V81e-100ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2N9IAG21e-133A0A2N9IAG2_FAGSY; Uncharacterized protein
STRINGPOPTR_0010s06290.11e-125(Populus trichocarpa)
STRINGEMJ281551e-124(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.15e-79response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]