PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02148-augustus-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family LBD
Protein Properties Length: 232aa    MW: 25093.2 Da    PI: 6.7104
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02148-augustus-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.75.2e-40371381101
                                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvy 63 
                                                    +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ y
  maker-scaffold02148-augustus-gene-0.31-mRNA-1  37 PCGACKFLRRKCINGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPVHQRHDAVVTISY 100
                                                    7***********************9989************************************ PP

                                         DUF260  64 eAearardPvyGavgvilklqqqleqlkaelallkeel 101
                                                    eA+ar++dPvyG+v++il+lqqq+++l+aela+l+++l
  maker-scaffold02148-augustus-gene-0.31-mRNA-1 101 EAQARLSDPVYGCVSTILALQQQVASLQAELAMLQTQL 138
                                                    *********************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.09336138IPR004883Lateral organ boundaries, LOB
PfamPF031952.8E-3937135IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAETRGGDST SGNRRKGMGK RTMATVEAEP VVAAMAPCGA CKFLRRKCIN GCIFAPHFGS  60
DQGAARFAAV HKVFGASNVS KLLLHIPVHQ RHDAVVTISY EAQARLSDPV YGCVSTILAL  120
QQQVASLQAE LAMLQTQLIN SRFAFANSLQ NSQQQPQNIA VLQPAYSNNS SASNNLISMS  180
AFTSNFDIVA DTAPSPHSLE PLQLSRPSQD EEEDEEESNI PHVFGNEILH RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-39341448115LOB family transfactor Ramosa2.1
5ly0_B1e-39341448115LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929074.11e-140LOB domain-containing protein 20
SwissprotQ9SRV38e-80LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2N9EGE51e-122A0A2N9EGE5_FAGSY; Uncharacterized protein
STRINGXP_002525698.11e-117(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.19e-58LOB domain-containing protein 20