PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold02077-snap-gene-0.44-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

M-type_MADS

Protein Properties

Length: 70aa MW: 8251.59 Da PI: 11.5264

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold02077-snap-gene-0.44-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.6	1.9e-29	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l +s maker-scaffold02077-snap-gene-0.44-mRNA-1 9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.857	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.6E-38	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-28	2	63	IPR002100	Transcription factor, MADS-box
CDD	cd00265	6.70E-34	2	58	No hit	No description
PRINTS	PR00404	1.5E-27	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-27	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-27	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 70 aa Download sequence Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR 60 RRWYNVNTTH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_Q	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_R	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
1tqe_S	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
6byy_A	1e-18	1	59	1	59	MEF2 CHIMERA
6byy_B	1e-18	1	59	1	59	MEF2 CHIMERA
6byy_C	1e-18	1	59	1	59	MEF2 CHIMERA
6byy_D	1e-18	1	59	1	59	MEF2 CHIMERA
6bz1_A	1e-18	1	59	1	59	MEF2 CHIMERA
6bz1_B	1e-18	1	59	1	59	MEF2 CHIMERA
6bz1_C	1e-18	1	59	1	59	MEF2 CHIMERA
6bz1_D	1e-18	1	59	1	59	MEF2 CHIMERA
6c9l_A	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_B	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_C	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_D	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_E	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
6c9l_F	9e-19	1	59	1	59	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024027649.1	1e-37	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	1e-32	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	W9SH44	7e-37	W9SH44_9ROSA; MADS-box transcription factor 13
STRING	XP_010105873.1	1e-37	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	5e-35	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]