PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold02068-augustus-gene-0.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ARR-B
Protein Properties Length: 559aa    MW: 62481.3 Da    PI: 6.814
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold02068-augustus-gene-0.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.41.3e-27318372156
                                        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                                                    k +++Wt+eLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  maker-scaffold02068-augustus-gene-0.15-mRNA-1 318 KMKVDWTQELHKKFVHAVEQL-GVDHAIPSRILELMKVEGLTRHNVASHLQKYRMH 372
                                                    5689*****************.9*******************************96 PP
2Response_reg28.38.9e-11201261109
                                                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHH CS
                                   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlell 62 
                                                    vl+vd + + +e +r+ le  +y +v ++ d  eal  + +k   +++ ++ +  ++++G+  +
  maker-scaffold02068-augustus-gene-0.15-mRNA-1  20 VLLVDGDSNSAEEIRSKLEAMDY-IVSTFCDENEALSAILNKPgsFHVAIVEVGTSDSHGS--F 80 
                                                    89*********************.***************888888*****99999988886..7 PP

                                                    HHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                                   Response_reg  63 keireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                                    k +++++ +lp i+ +     +++ +++  Ga +fl Kp ++e+l++
  maker-scaffold02068-augustus-gene-0.15-mRNA-1  81 KFLETAK-DLPTIMTSNIHCLSTMMKCIAQGAVEFLRKPLSEEKLRN 126
                                                    7777777.9****9999999************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.27E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-1516159No hitNo description
PROSITE profilePS5011020.24919132IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.34E-821131No hitNo description
PROSITE profilePS5129414.669315374IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-26316375IPR009057Homeodomain-like
SuperFamilySSF466893.67E-18317375IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24318372IPR006447Myb domain, plants
PfamPF002494.2E-8321370IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MVCSANDLQE WKDFPKGLRV LLVDGDSNSA EEIRSKLEAM DYIVSTFCDE NEALSAILNK  60
PGSFHVAIVE VGTSDSHGSF KFLETAKDLP TIMTSNIHCL STMMKCIAQG AVEFLRKPLS  120
EEKLRNIWQH VVHKAFNAGG SNLSESLKPV KESVVSMLQL QLENGEPENR ISVETKNESP  180
VHENDKEHSA GSDKYPAPST PQLKQGTRLL DDGDCQDQTN CSTEKESGEQ DGESKSVETT  240
CGDSIGVGTL QVDKPQIPEK NLIKEEEESA DGFKSERKVS HHQHNRDSPS NKENDCAEKP  300
IKPSQPHNSC GARANRKKMK VDWTQELHKK FVHAVEQLGV DHAIPSRILE LMKVEGLTRH  360
NVASHLQKYR MHRRHILPKE QERRWPRSRD LMQRNYYQQR PIMAFPPYHS NHTLSTAPIY  420
PIWGQPSSQQ AGAQLWGQPG YPALQPTNNW HWNPYPGMPA DHAWGCPVVP PTHHPYTSYP  480
QNAAGFHHAG AVDNSCGMPP VDHHPEEEVI DKVVKEAIGK PWLPLPLGLK PPSTDSVLAE  540
LCKQGISTIP PNIKSSKPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-15316376363ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879932.10.0two-component response regulator-like APRR2
RefseqXP_023879933.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-151APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A2I4DEY80.0A0A2I4DEY8_JUGRE; two-component response regulator-like APRR2 isoform X1
STRINGVIT_02s0012g00570.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-154ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]