PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold02009-augustus-gene-0.25-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SRS | ||||||||
Protein Properties | Length: 256aa MW: 27400.7 Da PI: 4.644 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 85.6 | 1.2e-26 | 122 | 177 | 99 | 154 |
DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le ++P+ev+s+avfrcvrvs+++d +e++aYqtavsigGhvfkGiLydqG+e+ maker-scaffold02009-augustus-gene-0.25-mRNA-1 122 GLELGQFPAEVNSPAVFRCVRVSAMEDPDEQYAYQTAVSIGGHVFKGILYDQGPED 177 567789************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.6E-24 | 105 | 176 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 1.6E-27 | 127 | 175 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAGLFYLGGR EGSHNKQEEE EEKQENNSNS LYLYRNEEIY NHNSSSNNKG FELWPQQQYY 60 PPQQNLSNFY SFGVGPSSRR ISNHNLNDVS DHHESSRSGF TLMRQGGLGG LGGGGMNCQD 120 CGLELGQFPA EVNSPAVFRC VRVSAMEDPD EQYAYQTAVS IGGHVFKGIL YDQGPEDRYT 180 TGGEISSGGG SGGGGGGGGT QPLNLITAGT TSTNVTTAST SNNPTTTTTL LDPSSLFPAP 240 INAFMAGTQF FPPPRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 186 | 199 | SGGGSGGGGGGGGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269|PubMed:10368174, ECO:0000269|PubMed:11706176, ECO:0000269|PubMed:16740146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023883335.1 | 2e-62 | protein SHI RELATED SEQUENCE 5-like | ||||
Swissprot | Q9SD40 | 1e-36 | SRS1_ARATH; Protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9XGX0 | 6e-37 | SHI_ARATH; Protein SHORT INTERNODES | ||||
TrEMBL | A0A2P5R1X0 | 1e-70 | A0A2P5R1X0_GOSBA; Uncharacterized protein | ||||
STRING | EOX90942 | 3e-45 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G51060.1 | 2e-31 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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