PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01867-augustus-gene-0.30-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SBP | ||||||||
Protein Properties | Length: 469aa MW: 52259.4 Da PI: 8.4831 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.6 | 1.4e-41 | 179 | 256 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-ST CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrr 64 +CqvegC+ dls+ak+yhr+h+vCe hsk+p+v v gle+rfCqqCsrfh lsefDe+krsCrr maker-scaffold01867-augustus-gene-0.30-mRNA-1 179 RCQVEGCNLDLSSAKDYHRKHRVCESHSKSPMVNVGGLERRFCQQCSRFHGLSEFDEKKRSCRR 242 6*************************************************************** PP TTT-------S--- CS SBP 65 rLakhnerrrkkqa 78 rL++hn+rrrk+q+ maker-scaffold01867-augustus-gene-0.30-mRNA-1 243 RLSDHNARRRKPQP 256 ***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.2E-34 | 175 | 241 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.915 | 177 | 254 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-39 | 178 | 259 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.7E-32 | 180 | 253 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MEWNEKSPSQ WEWENLFMFN AKATENSKLQ EIEWGMQGDQ GINSGSFYSS AGGEGSDGSG 60 PELGHASPSK SSKSASINSS SMGESKPSKL TFEAFGGFPN DLSNKKELAK VEPKRISRTL 120 EPSSGCGEPL LSLKLGKQMY FEDACAGSNT ETSTFSMIPM PSVTIAKKCK TSFPSTTPRC 180 QVEGCNLDLS SAKDYHRKHR VCESHSKSPM VNVGGLERRF CQQCSRFHGL SEFDEKKRSC 240 RRRLSDHNAR RRKPQPEAVR LNPARLPSSL YDGKQQMSLL FNKGPLAYSR AAGFTWEDIC 300 SSKINQTKEY PLKVAKARDS DIQLHLPSNE MPRSINTLCH DSSRLLPSKG TIAEALNPGL 360 GEPMMSTDLD ASQDFRRALS LLSTNSWDSR ESKPARHPHS NHTSQSNMPQ PLMHAMTQGL 420 PHTSSEHRRT EQQSTESQVH ILSSPNNGSS HFQEFQLFKE PYEFGFYSN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-27 | 180 | 253 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 235 | 252 | KKRSCRRRLSDHNARRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023926742.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
Refseq | XP_023926743.1 | 0.0 | squamosa promoter-binding-like protein 10 | ||||
TrEMBL | A0A2N9HET0 | 0.0 | A0A2N9HET0_FAGSY; Uncharacterized protein | ||||
STRING | VIT_01s0010g03710.t01 | 1e-178 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4630 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 3e-66 | squamosa promoter binding protein-like 2 |