PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01810-augustus-gene-0.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRF
Protein Properties Length: 400aa    MW: 43932.9 Da    PI: 8.2626
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01810-augustus-gene-0.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC80.61.5e-25155198144
                                            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                                    d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e
  maker-scaffold01810-augustus-gene-0.25-mRNA-1 155 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHVHRGRNRSRKPVE 198
                                                    79***************************************987 PP
2QLQ51.82.5e-1884120137
                                            QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                                                    s+F+ aQ+q+L+ Q+l+y+y++a+  vPpeLlq+i+k
  maker-scaffold01810-augustus-gene-0.25-mRNA-1  84 SYFSLAQWQELELQALIYRYMLAGTAVPPELLQPIKK 120
                                                    79*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-1184120IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.36885120IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-1385118IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.918155199IPR014977WRC domain
PfamPF088797.3E-22156198IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MDFHLKQWRN HQHESEQQQQ QQQHSVKIPK LLLEPHQQQQ QQPQIQASAS ALPLFVPEPN  60
SKISSLSAYP DSTLATTRFP RMSSYFSLAQ WQELELQALI YRYMLAGTAV PPELLQPIKK  120
SLHISPYFLH HPLQHYPHFQ PALFQSGYWG RGAMDPEPGR CRRTDGKKWR CSRDVVAGQK  180
YCERHVHRGR NRSRKPVEIP TPMTSVTSSS PTTTIAGCGG TFKAPTTVAS GTPFALSGPS  240
PSIDLLHLNQ SSLGSKTENK SGLFEAQHEV SADGKSDGHV LRHFFDDWPR SLQESDNAGS  300
NSSPMNSATC LSISMPGNSS SDVSLKLSTG IGEEPGSRDS NAESEQPQLN WASGWATNHV  360
SSMGGPLAEA LRSSTSNSSP TSVLHQLPRG SASETSFVST
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897838.10.0growth-regulating factor 3-like
RefseqXP_023900382.10.0growth-regulating factor 3-like
SwissprotQ8L8A71e-97GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A2N9G3Z40.0A0A2N9G3Z4_FAGSY; Uncharacterized protein
STRINGXP_006430277.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.14e-82growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]