PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01809-augustus-gene-0.17-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27378.1 Da    PI: 9.9009
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01809-augustus-gene-0.17-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.75.6e-27959151
                                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                                   krien + rqvtfskRrng+lKKA+ELS+LCdaeva++ifs++gk y ++s
  maker-scaffold01809-augustus-gene-0.17-mRNA-2  9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALVIFSPSGKGYQFAS 59
                                                   79********************************************99986 PP
2K-box52.91.6e-1879142770
                                          K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                                                     +++++ +e +++e++ Lk+ +e L+  + h  GedL+sL +keL+qLe+q  ++++++RskK+
  maker-scaffold01809-augustus-gene-0.17-mRNA-2  79 IDQHSRPMEFWRTEIEELKRAVEILEARLSHSAGEDLSSLGMKELKQLERQTRTAVERVRSKKD 142
                                                    457788899******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.847161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-39160IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-33290IPR002100Transcription factor, MADS-box
CDDcd002651.32E-39270No hitNo description
PRINTSPR004041.4E-29323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-293859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1583204IPR002487Transcription factor, K-box
PROSITE profilePS5129711.13286210IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALVIFSP SGKGYQFASH  60
DMNRTIARYR SEVGLPQSID QHSRPMEFWR TEIEELKRAV EILEARLSHS AGEDLSSLGM  120
KELKQLERQT RTAVERVRSK KDVAHIEPEK EGIETRKLVD YLVNENPQKN DLENSRRIIS  180
ENINLMKRKQ RDLQEENSHL QRRLHELHDT NVSSKISGQT ASSCNIPNPR VLQDGVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-22169169MEF2 CHIMERA
6byy_B3e-22169169MEF2 CHIMERA
6byy_C3e-22169169MEF2 CHIMERA
6byy_D3e-22169169MEF2 CHIMERA
6bz1_A2e-22169169MEF2 CHIMERA
6bz1_B2e-22169169MEF2 CHIMERA
6bz1_C2e-22169169MEF2 CHIMERA
6bz1_D2e-22169169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894512.11e-136truncated transcription factor CAULIFLOWER A-like
RefseqXP_023894513.11e-136truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A097C2624e-95A0A097C262_9ROSI; MADS-like protein
STRINGGorai.007G043400.16e-84(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.14e-42MIKC_MADS family protein