PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01809-augustus-gene-0.17-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27378.1 Da PI: 9.9009 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.7 | 5.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELS+LCdaeva++ifs++gk y ++s maker-scaffold01809-augustus-gene-0.17-mRNA-1 9 KRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALVIFSPSGKGYQFAS 59 79********************************************99986 PP | |||||||
2 | K-box | 52.9 | 1.6e-18 | 79 | 142 | 7 | 70 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 +++++ +e +++e++ Lk+ +e L+ + h GedL+sL +keL+qLe+q ++++++RskK+ maker-scaffold01809-augustus-gene-0.17-mRNA-1 79 IDQHSRPMEFWRTEIEELKRAVEILEARLSHSAGEDLSSLGMKELKQLERQTRTAVERVRSKKD 142 457788899******************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.847 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.23E-33 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.32E-39 | 2 | 70 | No hit | No description |
PRINTS | PR00404 | 1.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-15 | 83 | 204 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.132 | 86 | 210 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSILCD AEVALVIFSP SGKGYQFASH 60 DMNRTIARYR SEVGLPQSID QHSRPMEFWR TEIEELKRAV EILEARLSHS AGEDLSSLGM 120 KELKQLERQT RTAVERVRSK KDVAHIEPEK EGIETRKLVD YLVNENPQKN DLENSRRIIS 180 ENINLMKRKQ RDLQEENSHL QRRLHELHDT NVSSKISGQT ASSCNIPNPR VLQDGVVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_A | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_B | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_C | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6bz1_D | 2e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023894512.1 | 1e-136 | truncated transcription factor CAULIFLOWER A-like | ||||
Refseq | XP_023894513.1 | 1e-136 | truncated transcription factor CAULIFLOWER A-like | ||||
TrEMBL | A0A097C262 | 4e-95 | A0A097C262_9ROSI; MADS-like protein | ||||
STRING | Gorai.007G043400.1 | 6e-84 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 4e-42 | MIKC_MADS family protein |