PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01802-augustus-gene-0.20-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LSD | ||||||||
Protein Properties | Length: 174aa MW: 18334.2 Da PI: 8.3185 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.4 | 9.9e-13 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP GA++V+CalC+tV maker-scaffold01802-augustus-gene-0.20-mRNA-1 7 CNGCRSVLLYPGGATNVCCALCNTV 31 ************************9 PP | |||||||
2 | zf-LSD1 | 38 | 2.7e-12 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrtlL+Y+r A+sVRC++C tV maker-scaffold01802-augustus-gene-0.20-mRNA-1 44 CAGCRTLLMYTRAATSVRCSCCSTV 68 ***********************99 PP | |||||||
3 | zf-LSD1 | 46.7 | 5e-15 | 82 | 106 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+Ca+C+ V maker-scaffold01802-augustus-gene-0.20-mRNA-1 82 CGSCRTMLMYPYGAPSVKCAVCHYV 106 **********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.2E-11 | 4 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.8E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.3E-14 | 41 | 70 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.1E-9 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.30.40.10 | 8.0E-4 | 58 | 109 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
TIGRFAMs | TIGR01053 | 5.3E-15 | 79 | 109 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.0E-14 | 82 | 106 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MQSQLVCNGC RSVLLYPGGA TNVCCALCNT VTPVPGTEMA QLVCAGCRTL LMYTRAATSV 60 RCSCCSTVNL APVPTQYAHV NCGSCRTMLM YPYGAPSVKC AVCHYVTNVG MANARLPIPM 120 HRPNGTAYSG TTPSTSTSTP YSQSQTVVVE NPMSFDESGK LVSNVVVGVT TDKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023873228.1 | 1e-112 | protein LSD1 | ||||
Refseq | XP_023873229.1 | 1e-112 | protein LSD1 | ||||
Swissprot | Q2QMB3 | 2e-70 | LOL2_ORYSJ; Protein LOL2 | ||||
TrEMBL | A0A314Y6K1 | 5e-99 | A0A314Y6K1_PRUYE; Protein LSD1 | ||||
STRING | XP_008225697.1 | 2e-99 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4027 | 33 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 8e-68 | LSD family protein |
Publications ? help Back to Top | |||
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