PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01800-snap-gene-0.38-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CPP
Protein Properties Length: 765aa    MW: 83357.1 Da    PI: 5.6477
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01800-snap-gene-0.38-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR52.78.5e-17472508440
                                        TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                                ++CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  maker-scaffold01800-snap-gene-0.38-mRNA-1 472 QRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 508
                                                79*********************************96 PP
2TCR50.73.7e-16555593139
                                        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                                                ++k+gCnCkks+ClkkYCeC++ g+ Cs  C+Ce+CkN 
  maker-scaffold01800-snap-gene-0.38-mRNA-1 555 RHKRGCNCKKSNCLKKYCECYQGGVGCSIGCRCEGCKNA 593
                                                589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.9E-17469510IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.726470595IPR005172CRC domain
PfamPF036381.4E-12472507IPR005172CRC domain
SMARTSM011148.3E-17555596IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-11557593IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MDTPERNQIG TPISKFEDSP VFNYINSLSP IKPVKSIHIT QTFNPLNFSS LPSVFTSPHV  60
NSHKESRLKR HNCSDPSKPE FSSENGNKAC TNEGIGVDAT QLYDNAAELQ DNFDSGVSDR  120
EASVEPSSEH SKFAIELPRT LKYDCGSPVC DPTPCCGTEA GCMPTSLVQC GQEASAKGSP  180
EGEVHLSEMC RTDQTKEGLE CDWESLISDC PDILIFNSPN DSEAFKGLIQ KSVEPLTRFC  240
SSLMSQLPRN EFNDEHKMQI VDPVDSGELE TEDLSAKPGE ASELEEIDQL QNNPADTVLY  300
KGMSSNASEK LDNEVGMYMP HGSKAVTILH RGMRRRCLDF EMVGARRKNL GDGSNSGSSM  360
LSQSDENIAC HDNQLVPFKP GGDSSRCILP GIGLHLNALA TTSKDYKNVK HEDFSSGRQS  420
YLPSSTASLH SPSNSQEPFL QSLATASSER ETDHGENGAA PVEDASQASA YQRCNCKKSK  480
CLKLYCECFA AGVYCIEPCS CQDCFNKPIH EDTVLATRKQ IESRNPLAFA PKVIRNSDSV  540
AEIGDESSKT PASARHKRGC NCKKSNCLKK YCECYQGGVG CSIGCRCEGC KNAFGRKDGS  600
APIGTEAELD EETEACENSA VDKVLQKHEI QNNEEQNPAS ALPMTPLRIS RPMVPLPFSS  660
NVKLSRASFI TMGSSSGLYT SQKLGKPSIL RSVPKFEKHF QTVPEDEMPE ILRGNCTPST  720
GVKSSSPNSK RVSPPQSDFG ASPSRRSGRK LILQSIPSFP SLTQH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-1747459214120Protein lin-54 homolog
5fd3_B6e-1747459214120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023909383.10.0protein tesmin/TSO1-like CXC 2
TrEMBLA0A2I4EGY10.0A0A2I4EGY1_JUGRE; protein tesmin/TSO1-like CXC 2 isoform X3
STRINGXP_008224266.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26193375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-162TESMIN/TSO1-like CXC 2