PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01755-snap-gene-0.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ARF
Protein Properties Length: 682aa    MW: 75507.2 Da    PI: 6.2984
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01755-snap-gene-0.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.6e-23124225199
                                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE CS
                                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvl 61 
                                                f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++l
  maker-scaffold01755-snap-gene-0.22-mRNA-1 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGGVWKFRHIYRGTPRRHLL 189
                                                89****************************985444444..8999*********************** PP

                                                -TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                         B3  62 tkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                                t+GW++Fv+ ++L +gD++vF   + +++ l+v+++r+
  maker-scaffold01755-snap-gene-0.22-mRNA-1 190 TTGWSNFVNRKKLVAGDSIVFL--RAENGDLCVGIRRA 225
                                                **********************..4488999****997 PP
2Auxin_resp110.81.4e-36281364183
                                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvs 67 
                                                aa+ a+++++FevvY+Prast+eF vk++ v++a+++++s GmRfkm fetedss++++ +Gt+++v+
  maker-scaffold01755-snap-gene-0.22-mRNA-1 281 AATLATNGKPFEVVYYPRASTPEFFVKASVVRAAMEIHWSSGMRFKMPFETEDSSRISWfMGTISAVQ 348
                                                68899*************************************************************** PP

                                 Auxin_resp  68 dldpvrWpnSkWrsLk 83 
                                                 +dpvrWp+S+Wr+L+
  maker-scaffold01755-snap-gene-0.22-mRNA-1 349 VADPVRWPDSPWRLLQ 364
                                                **************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-29113227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-36118227IPR015300DNA-binding pseudobarrel domain
CDDcd100173.00E-21123224No hitNo description
PfamPF023623.9E-21124225IPR003340B3 DNA binding domain
PROSITE profilePS5086312.957124226IPR003340B3 DNA binding domain
SMARTSM010197.3E-23124226IPR003340B3 DNA binding domain
PfamPF065076.8E-32281364IPR010525Auxin response factor
PROSITE profilePS5174517.115600675IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009733Biological Processresponse to auxin
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MITVMDSVKE IPMRNSDKSL DSQLWHACAG GMVQMPPINS KVFYFPQGHA EHALGGNVDF  60
GSSRIPSLIP CRVNTIRYLA DPESDEVYAK LKLVPLRNNE LDFEDDGFLG ASGIDQGQEK  120
LVSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYNAEPP VQTILAKDVH GGVWKFRHIY  180
RGTPRRHLLT TGWSNFVNRK KLVAGDSIVF LRAENGDLCV GIRRAKRGIG GGIEYLSGWN  240
QEAANCGSTF GVYSSFMRES KNSSKPMELG GKVRNESVVE AATLATNGKP FEVVYYPRAS  300
TPEFFVKASV VRAAMEIHWS SGMRFKMPFE TEDSSRISWF MGTISAVQVA DPVRWPDSPW  360
RLLQVAWDEP DLLQNVKCVN PWLVELVSNI PVMHIPTFSP PRKKMRLPQQ ADYSLISQFP  420
MPSFSNNLLH TSSPFCGFSD NIPAGIQGAR HAQFGISSED LLHNNKMHSS LFPIGFQQLD  480
HAATPPRVPG GNFIDHAERN DASCLLTMGN TTRSLKENNE VKAPHIVLFG QLIFTEEQIS  540
KSCSGDTIGN SSSDMSPEKA ANFSDGSDSV LHQNVSLENS SDGGSPWYKD HRNNDLALEP  600
GHCKVFLESV DVGWTLDLSS LGSYEELYVK LAKMFRLESS QILLYQDALG AVKHTGEESF  660
SEFVKTARRL TVLTDSGSDN IE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-802038551388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023897376.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2N9F2890.0A0A2N9F289_FAGSY; Auxin response factor
STRINGXP_006485698.10.0(Citrus sinensis)
STRINGXP_006436433.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]