PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01748-augustus-gene-0.29-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Nin-like

Protein Properties

Length: 885aa MW: 98225.9 Da PI: 5.4725

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01748-augustus-gene-0.29-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.8	2.1e-28	614	664	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl +l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ maker-scaffold01748-augustus-gene-0.29-mRNA-1 614 EKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 664 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	603	684	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-24	617	664	IPR003035	RWP-RK domain
SuperFamily	SSF54277	6.87E-23	777	872	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.1E-23	786	867	No hit	No description
PROSITE profile	PS51745	24.692	787	870	IPR000270	PB1 domain
SMART	SM00666	3.2E-27	787	870	IPR000270	PB1 domain
CDD	cd06407	2.38E-41	788	869	No hit	No description
Pfam	PF00564	4.4E-18	788	869	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 885 aa Download sequence Send to blast
MEIERKLNME YSGFTPNNST AYGNFSDNNT MASDFMGELL SEGCWLETST GGFNFLPPAP 60 LPTTTTPSRA LNDPSHYYLP SLDSNPHQHI YQEDQTEEAF PESESILVDS NELGRRWWIG 120 PRANPGPCSS VKERLVLAVE YLKECTKNMN VLIQIWVPIM KAERYFLSTY DQPYSFDPNS 180 KSLADYRNIS RAYQFAVEED REESVGIPGR VFLGRLPEWT PDVRFFKRDE YPRISYAQQY 240 DICGSLALPV FERGSGTCLG VVEIVTTTQK INYRPELEHV CQALEAVDLR SSQYFSPPTV 300 KACDELYQAE LNEIVEVLTS VSKTHRLPLA LTWAPCVQQG KGGCRHSDEN FAHCVSTVDT 360 ACYVADLEVL GFLEACSEYH LFRGEGTVGT AFATTKPCFA TDITAFSKTE YPLSHHARMF 420 GLHAAVAIPL RSIYTGSADF VLEFFLPKDC QDPEEQKQML NSLSIVLQQA CRSPHAVVDK 480 ELEDEAILYP VKEVVIGSDG KPTSSTTTNL KEACSKESSW VAHMMEAQQK GKGVSISLEY 540 QEEESNEEFK VTTHWDSTQV GLRSGQAFSD FGAQLQRSSE SKGSAEGGGD SYSYGGRQSS 600 GGRKAGEKRR TKTEKTISLP VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK 660 IKKVGHSLRK IQLVIDSVQG AEGSIQIGSF YNSFPELSSQ QANSPSSSLN MSDSKHPHSK 720 QESGLLSFGS GPLKSPASSC SQTSSPRIYC TTGEKQHSTS INALSSADTL MTENLESSSQ 780 NSRDGDAFRV KATFGDEKIR FSLHPNWSFG ALQLEIARRF NLDDVSRVDI KYLDDDREWV 840 LLACDADLQE CMDMFRASQS HTIRLSLQHA CDQSLGSPFG GSGLS

Sequence ? help Back to Top

Protein Sequence Length: 885 aa Download sequence Send to blast

MEIERKLNME YSGFTPNNST AYGNFSDNNT MASDFMGELL SEGCWLETST GGFNFLPPAP  60
LPTTTTPSRA LNDPSHYYLP SLDSNPHQHI YQEDQTEEAF PESESILVDS NELGRRWWIG  120
PRANPGPCSS VKERLVLAVE YLKECTKNMN VLIQIWVPIM KAERYFLSTY DQPYSFDPNS  180
KSLADYRNIS RAYQFAVEED REESVGIPGR VFLGRLPEWT PDVRFFKRDE YPRISYAQQY  240
DICGSLALPV FERGSGTCLG VVEIVTTTQK INYRPELEHV CQALEAVDLR SSQYFSPPTV  300
KACDELYQAE LNEIVEVLTS VSKTHRLPLA LTWAPCVQQG KGGCRHSDEN FAHCVSTVDT  360
ACYVADLEVL GFLEACSEYH LFRGEGTVGT AFATTKPCFA TDITAFSKTE YPLSHHARMF  420
GLHAAVAIPL RSIYTGSADF VLEFFLPKDC QDPEEQKQML NSLSIVLQQA CRSPHAVVDK  480
ELEDEAILYP VKEVVIGSDG KPTSSTTTNL KEACSKESSW VAHMMEAQQK GKGVSISLEY  540
QEEESNEEFK VTTHWDSTQV GLRSGQAFSD FGAQLQRSSE SKGSAEGGGD SYSYGGRQSS  600
GGRKAGEKRR TKTEKTISLP VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK  660
IKKVGHSLRK IQLVIDSVQG AEGSIQIGSF YNSFPELSSQ QANSPSSSLN MSDSKHPHSK  720
QESGLLSFGS GPLKSPASSC SQTSSPRIYC TTGEKQHSTS INALSSADTL MTENLESSSQ  780
NSRDGDAFRV KATFGDEKIR FSLHPNWSFG ALQLEIARRF NLDDVSRVDI KYLDDDREWV  840
LLACDADLQE CMDMFRASQS HTIRLSLQHA CDQSLGSPFG GSGLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023901003.1	0.0	protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A2N9I6V8	0.0	A0A2N9I6V8_FAGSY; Uncharacterized protein
STRING	XP_008235979.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein