PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01722-augustus-gene-0.33-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | WRKY | ||||||||
Protein Properties | Length: 414aa MW: 45247.9 Da PI: 6.7026 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.5 | 2.7e-28 | 113 | 170 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK vkg+ef rsYY+Ct+++C vkk++er++ +++++ tY g+H h+k maker-scaffold01722-augustus-gene-0.33-mRNA-1 113 EDGYNWRKYGQKLVKGNEFIRSYYKCTHSRCLVKKQLERTH-GGQIIDATYFGQHVHPK 170 8***************************************9.***************85 PP | |||||||
2 | WRKY | 107.2 | 8e-34 | 288 | 346 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+vkg+++prsYYrC+ +gCpvkk+ver+++dpkvv++tYeg+H+h+ maker-scaffold01722-augustus-gene-0.33-mRNA-1 288 VNDGYRWRKYGQKMVKGNPNPRSYYRCSNSGCPVKKHVERASHDPKVVITTYEGQHDHD 346 58********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.987 | 107 | 171 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.2E-24 | 108 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-23 | 108 | 171 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-30 | 112 | 170 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-21 | 113 | 169 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-36 | 274 | 348 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-30 | 280 | 348 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.254 | 283 | 348 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-39 | 288 | 347 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-27 | 289 | 345 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MISSGECAPD EGASDKMQHR QSSDGGIALD QIPDDGLQAK QSDQEASTPS SIPEKASQAP 60 DAAVQTSQSD QEQSPSSIIS EKGSQARDPS NLASQSGQEG STPPVIREKV VTEDGYNWRK 120 YGQKLVKGNE FIRSYYKCTH SRCLVKKQLE RTHGGQIIDA TYFGQHVHPK PELIVPGSVG 180 LALSVLNEKP NEPSSIGAID KSLVEYGQTP HQMKPVDTSP SRCSTVAVSD DVKGALSQKS 240 RIRNEVVVDD DLDSKRRKKE ECNVAVSVEK PSGEPRSVVQ TLSEVDIVND GYRWRKYGQK 300 MVKGNPNPRS YYRCSNSGCP VKKHVERASH DPKVVITTYE GQHDHDMPPA RIVTHNTAGS 360 NVHTTAHNGE ASTKSEDEEL NGKRSRTKSE MNGKPGIETN INEQQTPNPE PVQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-36 | 111 | 350 | 2 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023916985.1 | 0.0 | WRKY transcription factor 1-like | ||||
Swissprot | Q9SI37 | 6e-87 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | A0A2N9FHX7 | 1e-176 | A0A2N9FHX7_FAGSY; Uncharacterized protein | ||||
STRING | XP_008229878.1 | 1e-141 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9358 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 7e-92 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
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