PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01687-augustus-gene-0.19-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | NF-YB | ||||||||
Protein Properties | Length: 184aa MW: 20479.3 Da PI: 4.4067 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 38.3 | 3.2e-12 | 76 | 122 | 40 | 86 |
NF-YB 40 sefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 efi +++se+++ c re+++ti+++ +l al lGf +y++++ + maker-scaffold01687-augustus-gene-0.19-mRNA-1 76 LEFINLISSESNEVCSREEKRTIAPEHVLKALQVLGFGEYIDEVYAA 122 59****************************************98654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.6E-10 | 8 | 48 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 4.97E-8 | 12 | 48 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.1E-7 | 14 | 48 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.2E-22 | 77 | 168 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.1E-7 | 77 | 107 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 1.3E-19 | 77 | 169 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MEPMDIVGKS KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVGQ VFIGSKAEQK 60 LFVQTLASFD TVCFKLEFIN LISSESNEVC SREEKRTIAP EHVLKALQVL GFGEYIDEVY 120 AAYEQHKLET MQDSLKGGKW SNGAEMTEEE ALAEQQRMFA EARARMNGGA APPKEPDSDQ 180 TLDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 2e-28 | 12 | 163 | 12 | 133 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023874746.1 | 1e-107 | protein Dr1 homolog isoform X1 | ||||
Refseq | XP_023884927.1 | 1e-107 | protein Dr1 homolog isoform X1 | ||||
Swissprot | P49592 | 2e-86 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A2I4HHH3 | 1e-100 | A0A2I4HHH3_JUGRE; protein Dr1 homolog isoform X1 | ||||
STRING | XP_007155169.1 | 1e-100 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4766 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 9e-89 | nuclear factor Y, subunit B13 |
Publications ? help Back to Top | |||
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