PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01667-snap-gene-0.37-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YA
Protein Properties Length: 318aa    MW: 34643.1 Da    PI: 9.6637
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01667-snap-gene-0.37-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.61.3e-30151207158
                                  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                                d p+YVNaKQy++I++RRq+Rak+  e+kl +++rkpy+heSRh hA+rRpRg+gGrF
  maker-scaffold01667-snap-gene-0.37-mRNA-1 151 DGPIYVNAKQYHGIIRRRQSRAKALMENKL-TRARKPYMHESRHLHAKRRPRGCGGRF 207
                                                57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-33149210IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.387150210IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.0E-26153207IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-22153175IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.4E-22184207IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MATQAVYFKE HEGIVHNSMG QLPSSWWGSF ASQSGYGESC GRLKSFSMDL PSGGDQLIAN  60
KQAGRGTEHG AERGNTTQFT IFPGDGQKPQ ATISLQSSLS AYRGRFELGF SQPMICAKYP  120
YVDQCYGVFP NCGPQISGRV MLLPMNMATD DGPIYVNAKQ YHGIIRRRQS RAKALMENKL  180
TRARKPYMHE SRHLHAKRRP RGCGGRFLNT KSTNKEKSGT EVIKTGDGQL SQGTGSQSSE  240
VLQSDSGTFI SSKDAKGSGS NISGSGVTSM FCRGDLDRFQ INHLMPPAHP FADLIDGGRG  300
LVMPKWVTAP DNCCNLTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-16153214465NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A9e-17151208260HAPB protein
4g92_A9e-17151208260HAPB protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892091.10.0nuclear transcription factor Y subunit A-10-like
TrEMBLA0A2N9IMA40.0A0A2N9IMA4_FAGSY; Uncharacterized protein
STRINGXP_008241076.11e-150(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-53nuclear factor Y, subunit A10