PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01628-snap-gene-0.30-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26512.4 Da PI: 9.6049 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91.5 | 1e-28 | 35 | 136 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvy 63 +C++C+vlr++C++ Cvl+ ++ p++q ++ +++k+FG+s v+ +++a+pe++r+++++sl++ maker-scaffold01628-snap-gene-0.30-mRNA-1 35 SCNGCRVLRKGCSDTCVLRSCLqwiesPKAQGNAVLFLAKFFGRSDVIAFVSAVPETQRPALFQSLLF 102 6******************************************************************* PP DUF260 64 eAearardPvyGavgvilklqqqleqlkaelall 97 eA+ r+ +Pv G+vg++ +++++++q++++++l+ maker-scaffold01628-snap-gene-0.30-mRNA-1 103 EACGRTVNPVDGSVGLLARGKWHVCQTAVDTVLA 136 ***************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.54 | 34 | 140 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.4E-24 | 35 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
DYSSSSPSFC IKFCRFDHKR KGKKKNFKSK WVRMSCNGCR VLRKGCSDTC VLRSCLQWIE 60 SPKAQGNAVL FLAKFFGRSD VIAFVSAVPE TQRPALFQSL LFEACGRTVN PVDGSVGLLA 120 RGKWHVCQTA VDTVLAGGTP TPLTEFETHT NGIFHDTTCN PYLPFTAFMQ EAHQPSDPAL 180 TLSLGPKKIT TKPWSGYPRA LKQRMMAENT TSSSFSSEVS EMTSFGSSGN DQKKVLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023886298.1 | 1e-130 | LOB domain-containing protein 39-like | ||||
Swissprot | Q9FN11 | 2e-55 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
TrEMBL | A0A2N9E9Z1 | 8e-92 | A0A2N9E9Z1_FAGSY; Uncharacterized protein | ||||
STRING | XP_008365099.1 | 2e-68 | (Malus domestica) | ||||
STRING | XP_008377972.1 | 2e-68 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 6e-57 | LOB domain-containing protein 37 |
Publications ? help Back to Top | |||
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