PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01564-augustus-gene-0.45-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

M-type_MADS

Protein Properties

Length: 302aa MW: 34020.4 Da PI: 6.9882

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01564-augustus-gene-0.45-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.3	2e-23	9	53	1	45
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++snrqvt+skRr+gilKKA EL +LCd+++a+++fs+tg+ maker-scaffold01564-augustus-gene-0.45-mRNA-1 9 KRLESTSNRQVTYSKRRHGILKKARELAILCDIDIALLMFSPTGR 53 689****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.4E-30	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.848	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-26	2	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-20	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.6E-20	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-20	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.0E-20	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YSKRRHGILK KARELAILCD IDIALLMFSP TGRSTLYQGE 60 NRNFEEVIAK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIEDFLGSS SQTVEENFGK 120 HQLTSLECAT QFQNGMPLPI LMNGVHDAQS LSWLSNNDNQ HMLFPHEPNF LPQRDVECSS 180 DVSLPGYSGY FSTEKKDVVG NTIQLAHMGS GGGTLDELSR NTCLSMQLGE QYAYPSYGSS 240 NLLDDNKLKP QMEMNLQVNP LDCQINSNFG VSRPLCDSGH HTWFSASAPC SISIYNQNGY 300 QW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	2e-16	1	92	1	90	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023894357.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	5e-79	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	D7SIA1	1e-144	D7SIA1_VITVI; Agamous-like MADS-box protein 17
STRING	VIT_17s0000g06340.t01	1e-144	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2750	33	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	5e-71	AGAMOUS-like 65

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]