PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01545-augustus-gene-0.17-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

SRS

Protein Properties

Length: 451aa MW: 46649 Da PI: 8.2007

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01545-augustus-gene-0.17-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.7	1.3e-67	223	383	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaas 66 s t++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq ++ a+ a +s maker-scaffold01545-augustus-gene-0.17-mRNA-1 223 SSTTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMAGATGVAAGSS 286 57889*******************************************99999988888888 PP DUF702 67 aaeaaskrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrv 120 +++ +k++r +++++++s+t++s+++++++++tss lP +v+++avf+cvrv maker-scaffold01545-augustus-gene-0.17-mRNA-1 287 GSTSGAKKPRLI-ASQTTTTSHTSTSNTTPPRSFDTSSshqdvsfkeaLPGQVRAPAVFKCVRV 349 899999999975.88899999***********999********************* PP DUF702 121 ssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++v+dge+e+aYq++v+igGhvfkG+LydqG+e+ maker-scaffold01545-augustus-gene-0.17-mRNA-1 350 TAVEDGEDEFAYQAVVKIGGHVFKGFLYDQGVEN 383 *****************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.7E-62	225	382	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	5.2E-27	227	269	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	4.2E-29	334	381	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
VATTRRLPSD SGAFADWVAS SSSSRAAAPD ELSLGFNAGP TAPGPSSTTG PMWSSGSNTN 60 RPLNYGLATP TPTDMPMVGL RDVFVVATPA SSFHHNLNHH HHHHHHHDQS NMLSDPHSQF 120 NSSNPATALG VGVGVGVIPL LTAAPCATQN LALDDDTSNM FSNRNRSGGG IGGGGIQFWQ 180 NQQQQQQQQH AHYFKKPAIL EHGGGGNLVQ SGGGIGGSNT TSSSTTTCQD CGNQAKKDCT 240 HRRCRTCCKS RGFDCATHVK STWVPAARRR ERQLMAGATG VAAGSSGSTS GAKKPRLIAS 300 QTTTTSHTST SNTTPPRSFD TSSSHQDVSF KEALPGQVRA PAVFKCVRVT AVEDGEDEFA 360 YQAVVKIGGH VFKGFLYDQG VENNSNREGY PNISELHLGG GGGGGGGNSN GGNGGRNGAS 420 SSSPMLDPTD VYAPSGGGGL LGGSSYGNPI N

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

VATTRRLPSD SGAFADWVAS SSSSRAAAPD ELSLGFNAGP TAPGPSSTTG PMWSSGSNTN  60
RPLNYGLATP TPTDMPMVGL RDVFVVATPA SSFHHNLNHH HHHHHHHDQS NMLSDPHSQF  120
NSSNPATALG VGVGVGVIPL LTAAPCATQN LALDDDTSNM FSNRNRSGGG IGGGGIQFWQ  180
NQQQQQQQQH AHYFKKPAIL EHGGGGNLVQ SGGGIGGSNT TSSSTTTCQD CGNQAKKDCT  240
HRRCRTCCKS RGFDCATHVK STWVPAARRR ERQLMAGATG VAAGSSGSTS GAKKPRLIAS  300
QTTTTSHTST SNTTPPRSFD TSSSHQDVSF KEALPGQVRA PAVFKCVRVT AVEDGEDEFA  360
YQAVVKIGGH VFKGFLYDQG VENNSNREGY PNISELHLGG GGGGGGGNSN GGNGGRNGAS  420
SSSPMLDPTD VYAPSGGGGL LGGSSYGNPI N

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023876466.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	7e-85	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2N9FMN3	0.0	A0A2N9FMN3_FAGSY; Uncharacterized protein
STRING	XP_010269431.1	1e-141	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	7e-68	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]