PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01507-snap-gene-0.35-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family AP2
Protein Properties Length: 329aa    MW: 37155.8 Da    PI: 6.261
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01507-snap-gene-0.35-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-1250107156
                                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                                                s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++ge
  maker-scaffold01507-snap-gene-0.35-mRNA-1  50 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWGE 107
                                                57*******************99998898888888********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-1550116IPR016177DNA-binding domain
PfamPF008471.1E-850107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-1351115IPR001471AP2/ERF domain
SMARTSM003801.0E-1951120IPR001471AP2/ERF domain
PROSITE profilePS5103218.59751114IPR001471AP2/ERF domain
PRINTSPR003673.5E-65263IPR001471AP2/ERF domain
PROSITE profilePS510329.203118179IPR001471AP2/ERF domain
SMARTSM003800.0024132185IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-5153181IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.7E-6154180IPR001471AP2/ERF domain
PRINTSPR003673.5E-6161181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAKSSQNNQK NNANGSNNNN NNNTNSSNTV TKVKRTRRSV PRDSPPQRSS IYRGVTRHRW  60
TGRYEAHLWD KNCWNESQNK KGRQGAYDDE EAAAHAYDLA ALKYWGEETI LNFPLSIYHK  120
QLKEMEGLSR EEYIGSLRRK SSGFSRGVSK YRATQEEAAT AYDMAAIEYR GLNAVTNFDL  180
SRYIKWLKPN KDNSSNSTDY NPSLHVPNVE PNLTPNPNNQ ELASTFLHNQ QTYSSGETLL  240
TQPRPAATAT SALGLLLQSS KFREMMEMSS VAECSPMPSE SDPPQCSFPD DIQTYFDCQD  300
SSVYGEGDDN IFGELKSYVP PVFQCDFDT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895068.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-79AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2N9HKN41e-167A0A2N9HKN4_FAGSY; Uncharacterized protein
STRINGXP_008223596.11e-153(Prunus mume)
STRINGVIT_11s0037g00870.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-74ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]