PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01493-augustus-gene-0.32-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

WRKY

Protein Properties

Length: 502aa MW: 53740.1 Da PI: 7.6807

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01493-augustus-gene-0.32-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.3	2.1e-30	152	211	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+ maker-scaffold01493-augustus-gene-0.32-mRNA-1 152 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCAQDMTILITTYEGTHNHP 211 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.7E-31	137	211	IPR003657	WRKY domain
SuperFamily	SSF118290	1.03E-26	145	212	IPR003657	WRKY domain
PROSITE profile	PS50811	27.232	147	213	IPR003657	WRKY domain
SMART	SM00774	1.6E-35	152	212	IPR003657	WRKY domain
Pfam	PF03106	1.9E-26	153	211	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence Send to blast
MEAANKERSS HGGGVNEEKR NESSAHEEGC KEESIVIKVP PMGGSLKEPD STSSTSRKEQ 60 DDQLQSARAE MGEMREENQR LKNLGLDCKL ELSKPIEKQS PVNSSEEVKE EAGETWAPSK 120 ALKRSGDDEA PQQNPVKKAR VCVRARCDTP TMNDGCQWRK YGQKIAKGNP CPRAYYRCTI 180 APSCPVRKQV QRCAQDMTIL ITTYEGTHNH PLSMSATAMA STTSAAASML LSGSSSSSQF 240 PGHNSLATSG LNYYLSDDIK SKQFYLPNNS SFSSSVPSCP TITLDLTSAP SSSSSTHFNR 300 LSSNYPPKYS STSLNFSSSE SNAVSWANGF HSYGSTQPYY NRNQIGNLPI GRQIENNIYQ 360 SYMQKTNPSP PQHSQQDNSA IAAATKAITA DPSFQSALVA ALSSIMGTGG TATSGGALGN 420 HGGGDNNFGQ KSRWGSELFQ APSTTFPASP PTGNGCASSF LNETQSTTNS QPGSLMFLPP 480 SLPLSTSKSA SASPSDNRDH TN

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence Send to blast

MEAANKERSS HGGGVNEEKR NESSAHEEGC KEESIVIKVP PMGGSLKEPD STSSTSRKEQ  60
DDQLQSARAE MGEMREENQR LKNLGLDCKL ELSKPIEKQS PVNSSEEVKE EAGETWAPSK  120
ALKRSGDDEA PQQNPVKKAR VCVRARCDTP TMNDGCQWRK YGQKIAKGNP CPRAYYRCTI  180
APSCPVRKQV QRCAQDMTIL ITTYEGTHNH PLSMSATAMA STTSAAASML LSGSSSSSQF  240
PGHNSLATSG LNYYLSDDIK SKQFYLPNNS SFSSSVPSCP TITLDLTSAP SSSSSTHFNR  300
LSSNYPPKYS STSLNFSSSE SNAVSWANGF HSYGSTQPYY NRNQIGNLPI GRQIENNIYQ  360
SYMQKTNPSP PQHSQQDNSA IAAATKAITA DPSFQSALVA ALSSIMGTGG TATSGGALGN  420
HGGGDNNFGQ KSRWGSELFQ APSTTFPASP PTGNGCASSF LNETQSTTNS QPGSLMFLPP  480
SLPLSTSKSA SASPSDNRDH TN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-19	139	212	1	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007, ECO:0000269\|PubMed:24884371}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023875066.1	0.0	probable WRKY transcription factor 72
Swissprot	A0A3Q7GFB5	1e-88	WK72A_SOLLC; WRKY transcription factor 72A
TrEMBL	A0A2N9H460	0.0	A0A2N9H460_FAGSY; Uncharacterized protein
STRING	VIT_17s0000g05810.t01	1e-144	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF650	34	134

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	2e-56	WRKY DNA-binding protein 72

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]