PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01427-augustus-gene-0.23-mRNA-2

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 373aa MW: 41972.3 Da PI: 8.3477

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01427-augustus-gene-0.23-mRNA-2	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.8	1.8e-31	63	116	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH rF++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ++R+ maker-scaffold01427-augustus-gene-0.23-mRNA-2 63 PRLRWTPDLHLRFIHAVERLGGQDRATPKMVLQLMNIKGLSIAHVKSHLQMFRS 116 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.965	59	119	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-29	59	117	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.69E-14	61	117	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-22	63	118	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-8	64	114	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MEESGGSECS KMSPSNPNED GSESGENDDD YKPKNGGSSS NSTVEESEKK SSSVRPYVRS 60 KMPRLRWTPD LHLRFIHAVE RLGGQDRATP KMVLQLMNIK GLSIAHVKSH LQMFRSKKVD 120 DPGQVLADHR HLVESGDRNI YNLSQLPMLQ GYNPSHNSNF RYGHGDSSWS KAYENLMMSC 180 RGRSSTNNYG AGFYGTVSEK IFGSNYNSWT NCNFHRRAST FGEQSGWRTH ELKDGFQSFH 240 HNHESLHNQP RLTPIDLNPV THLKAEVLLQ EHTSSSNSNV PSEFNKTSIL QEWKTLKRKA 300 SDCNLDLDLS LRLTSSRNDD NHRRSLMDHK VDHSNLSLSL YSQSSSSLTS LKDGRVDGNK 360 EQAKGASTLD LTI

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MEESGGSECS KMSPSNPNED GSESGENDDD YKPKNGGSSS NSTVEESEKK SSSVRPYVRS  60
KMPRLRWTPD LHLRFIHAVE RLGGQDRATP KMVLQLMNIK GLSIAHVKSH LQMFRSKKVD  120
DPGQVLADHR HLVESGDRNI YNLSQLPMLQ GYNPSHNSNF RYGHGDSSWS KAYENLMMSC  180
RGRSSTNNYG AGFYGTVSEK IFGSNYNSWT NCNFHRRAST FGEQSGWRTH ELKDGFQSFH  240
HNHESLHNQP RLTPIDLNPV THLKAEVLLQ EHTSSSNSNV PSEFNKTSIL QEWKTLKRKA  300
SDCNLDLDLS LRLTSSRNDD NHRRSLMDHK VDHSNLSLSL YSQSSSSLTS LKDGRVDGNK  360
EQAKGASTLD LTI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-16	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	64	118	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023922488.1	0.0	uncharacterized protein LOC112033940
TrEMBL	A0A2N9FI59	0.0	A0A2N9FI59_FAGSY; Uncharacterized protein
STRING	EOY07117	1e-127	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-58	G2-like family protein