PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01420-snap-gene-0.35-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

WOX

Protein Properties

Length: 248aa MW: 27632 Da PI: 5.3539

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01420-snap-gene-0.35-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	41.9	1.7e-13	3	46	19	57
HHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 19 Fek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +++ r psae++++++++l +++ ++V++WFqN++a+e++ maker-scaffold01420-snap-gene-0.35-mRNA-1 3 YNNgVRSPSAEQIQRISARLrqygKIEGKNVFYWFQNHKARERQ 46 5555899***********************************97 PP
2	Wus_type_Homeobox	82.6	4.9e-27	3	48	20	65
Wus_type_Homeobox 20 yksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 y++G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ maker-scaffold01420-snap-gene-0.35-mRNA-1 3 YNNGVRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKK 48 89******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	8.843	1	47	IPR001356	Homeobox domain
Pfam	PF00046	4.9E-11	3	46	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.57E-7	8	53	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-4	9	46	IPR009057	Homeodomain-like
CDD	cd00086	0.00257	10	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
LYYNNGVRSP SAEQIQRISA RLRQYGKIEG KNVFYWFQNH KARERQKKRL NSDVPMQRGV 60 GVGNTNWNNT PEESIHTKYP LPNITSGVSA SSSSSGVISV GHMGNYGYGS VIMEKSFRDC 120 SISNGGNNGG VGGSIGHNFG CVGADPYSSS YSTLFDKRRL MEENLGVQED EDEEEEEEEE 180 EAGEKETLPL FPMHAEDING FCNMNPYTTN NGYNYTSCYR SADDGINGSR TSLELSLNSY 240 SHRSSHYH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269\|PubMed:12208843}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM447418	3e-58	AM447418.2 Vitis vinifera contig VV78X032979.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023874797.1	1e-136	protein WUSCHEL-like
Swissprot	Q8LL11	2e-70	WUS_PETHY; Protein WUSCHEL
TrEMBL	A0A2I4FMY9	4e-94	A0A2I4FMY9_JUGRE; protein WUSCHEL-like
STRING	EOX90865	9e-88	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8241	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	5e-28	WOX family protein

Publications ? help Back to Top
Stuurman J,Jäggi F,Kuhlemeier C Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells. Genes Dev., 2002. 16(17): p. 2213-8 [PMID:12208843]