PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01324-augustus-gene-0.44-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 427aa    MW: 46355.5 Da    PI: 4.553
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01324-augustus-gene-0.44-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36941852102
                                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS
                                   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65 
                                                    Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv
  maker-scaffold01324-augustus-gene-0.44-mRNA-2  94 FLTKTYQLVDDPAVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 157
                                                    9*************************************************************** PP

                                                    --SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                                   HSF_DNA-bind  66 kdeekkskskekiweFkhksFkkgkkellekikrkks 102
                                                      ++         weF+++ Fk+g+k ll++i+r+k 
  maker-scaffold01324-augustus-gene-0.44-mRNA-2 158 VPDR---------WEFANDCFKRGEKALLREIQRRKI 185
                                                    **99.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.6E-5990183IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.04E-3591183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.104.4E-3891183IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.8E-3294183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-2094117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-20132144IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340133157IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-20145157IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1705.9E-4245270No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
SLSLSLSSAL CCGVWFTGEP NWFCSVLPCL FDEKSHSTLF QLKPPLSLSR PKPMGPSPVE  60
QSGDSGPGPG PGPGPGSVSV SVSGDSQRSI PTPFLTKTYQ LVDDPAVDDL ISWNDDGSTF  120
IVWRPAEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFANDCFK RGEKALLREI  180
QRRKISPATG AVAVPPAAGV TVAAAGLAGV RTVSPSNSGD EQVISSNSSP AAAIHRSTSC  240
TTTPELLEEN ERLRKENTQL SHELTQLRGL CNNIFAMMTT YASGQLDVGG GVNGNVNRNG  300
VAVSIPEGKP LDLLPSKQVT VTEDIDVDVG VGICGGAHMD EDDDEEEGEE EDETTPRLFG  360
FRIGVKRVRR SVEEEEVELE EEREGQNGEK VENSQEKESG SEVKSEPLDR NGNSGHRDPP  420
WLELGKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-269418329129Heat shock factor protein 1
5d5v_B9e-269418329129Heat shock factor protein 1
5d5v_D9e-269418329129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904255.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-106HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2N9E7Y61e-165A0A2N9E7Y6_FAGSY; Uncharacterized protein
STRINGcassava4.1_027702m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.12e-85HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]