PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01324-augustus-gene-0.44-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HSF
Protein Properties Length: 374aa    MW: 40517.7 Da    PI: 4.4531
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01324-augustus-gene-0.44-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.72.9e-36411322102
                                                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS
                                   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65 
                                                    Fl+k+y++++d+++++lisw+++g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv
  maker-scaffold01324-augustus-gene-0.44-mRNA-1  41 FLTKTYQLVDDPAVDDLISWNDDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV 104
                                                    9*************************************************************** PP

                                                    --SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
                                   HSF_DNA-bind  66 kdeekkskskekiweFkhksFkkgkkellekikrkks 102
                                                      ++         weF+++ Fk+g+k ll++i+r+k 
  maker-scaffold01324-augustus-gene-0.44-mRNA-1 105 VPDR---------WEFANDCFKRGEKALLREIQRRKI 132
                                                    **99.........*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.6E-5937130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3838130IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.4E-3538130IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.8E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-204164IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1705.0E-4192217No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGPSPVEQSG DSGPGPGPGP GPGSVSVSVS GDSQRSIPTP FLTKTYQLVD DPAVDDLISW  60
NDDGSTFIVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FANDCFKRGE  120
KALLREIQRR KISPATGAVA VPPAAGVTVA AAGLAGVRTV SPSNSGDEQV ISSNSSPAAA  180
IHRSTSCTTT PELLEENERL RKENTQLSHE LTQLRGLCNN IFAMMTTYAS GQLDVGGGVN  240
GNVNRNGVAV SIPEGKPLDL LPSKQVTVTE DIDVDVGVGI CGGAHMDEDD DEEEGEEEDE  300
TTPRLFGFRI GVKRVRRSVE EEEVELEEER EGQNGEKVEN SQEKESGSEV KSEPLDRNGN  360
SGHRDPPWLE LGKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A7e-274113010110Heat shock factor protein 1
5hdn_A7e-274113010110Heat shock factor protein 1
5hdn_B7e-274113010110Heat shock factor protein 1
5hdn_C7e-274113010110Heat shock factor protein 1
5hdn_D7e-274113010110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904255.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-108HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2N9E7Y61e-167A0A2N9E7Y6_FAGSY; Uncharacterized protein
STRINGcassava4.1_027702m1e-134(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-86HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]