PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold01265-snap-gene-0.37-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 20140.6 Da PI: 6.9328 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.8 | 5.2e-18 | 14 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT............-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ l+ +++ +G g +W++Ia++++ gRt++++k++w+++l maker-scaffold01265-snap-gene-0.37-mRNA-1 14 KGPWTPEEDQVLISYIQTYGHGnwralpkqagllRWSAIAARLP-GRTDNEIKNFWNSHL 72 79******************************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.09E-16 | 3 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.484 | 9 | 76 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-24 | 12 | 73 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.4E-16 | 13 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 14 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.33E-13 | 16 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MVRTPCCEKM GLKKGPWTPE EDQVLISYIQ TYGHGNWRAL PKQAGLLRWS AIAARLPGRT 60 DNEIKNFWNS HLKKRSLAQN LATSTTTNQA VGTPGYMLDR DFQGQVHAPN LPQESWKFSC 120 LDPIRMEAEG SSQTISMETE ETFNNDSSKN NDEMEFWYKL FIKSGESSQP HVNLGQSG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023876738.1 | 1e-118 | transcription factor MYB4-like | ||||
Swissprot | Q9SJX8 | 3e-36 | MYB14_ARATH; Transcription factor MYB14 | ||||
TrEMBL | A0A2I4EMU3 | 2e-48 | A0A2I4EMU3_JUGRE; myb-related protein Myb4-like | ||||
STRING | XP_006487722.1 | 2e-43 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 1e-38 | myb domain protein 14 |
Publications ? help Back to Top | |||
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