PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold01260-snap-gene-0.21-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

Nin-like

Protein Properties

Length: 1001aa MW: 110389 Da PI: 4.9773

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold01260-snap-gene-0.21-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.7e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ maker-scaffold01260-snap-gene-0.21-mRNA-1 599 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	584	670	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	602	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.83E-22	897	985	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.8E-23	898	980	No hit	No description
SMART	SM00666	5.9E-22	901	983	IPR000270	PB1 domain
PROSITE profile	PS51745	22.154	901	983	IPR000270	PB1 domain
CDD	cd06407	1.49E-32	902	982	No hit	No description
Pfam	PF00564	1.1E-17	904	982	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MDYSLSSKEK GTGFWQSPRP QLENLVSFEG TRSLNLEDSL SDLMNFDTDA GWYNSPSATD 60 QILTSYRLSS FPSTPYGVSS DALNFSEQNG GAFPVNEVGG TFNPVRNSFN CGDKLMFDQM 120 DTQYGFSMDL NDANGLATAQ NNCSIPQNSV FDMENCMIPR PLSMSVDEKM LKSLSLFKAS 180 SGGGILAQVW VPMRLGDQHI LSTCEQPYLL DEMLAGYREI SRSFIFPTER RSGSFLGLPG 240 RVFTSKVPEW TSNVSYYNKV EYLRADHAAQ HEVRGSIAVP VFDSPEMSCC AVLELVTTKE 300 KTNFNAELET VCNALQAVNL RTTEPPRIRP QCLSKNQRAA LAEIIDVLRA VCHAHRLPLA 360 LTWIPCYYTE GDGDEMTRVR VREGNTNSNE KCILCIEETA CYVNDRTMEG FVYACVEHHL 420 EEGQGIAGKA LQSNHPFFYA DVKNYDISEY PLVHHARKFG LNAAVSIRLR STYTGEDDYI 480 LELFLPVNMK GSAEQQLLLN NLSGTMQRIC KSLRTVSDAE LFGVEGSKVA FQKEENQNFP 540 LMAMPGENSQ LTLSDNDVNS TKKMSLEVSN TRNDIIEPDS LHKQATSGSR RHEKKRSTAE 600 KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV 660 LDSVQGVEGG LKFDPNTGEF MAAGSIIQET GSQKSLFPDK NLYVKNAELA TQNAVLVPSA 720 PGFDGMSSLI KLEEDDCSMG LNQVAPSRGK LNTNTCGEEL RKSNASLIDC SGNSQLVSIN 780 AVPCQQASLE TTSQASPENV SLGSYLVNRG EKYGLNKGSL KLENSDCHFV SQSSLAAGDD 840 IDTGIDVDDG IVEHNQPSSS GMTDSSNGSS SMIRGSSSSS QSFEEQKYSK VKTSCVDSGS 900 KIIVKATYRE DTIRLKFEPS AGCFQLYEEV GKRFKLQNGT FQLKYLDDEE EWVMLVTDSD 960 LQECLEILDD IGTRSVKLLV RDMPCSMNSS GSSNCFLTGG L

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MDYSLSSKEK GTGFWQSPRP QLENLVSFEG TRSLNLEDSL SDLMNFDTDA GWYNSPSATD  60
QILTSYRLSS FPSTPYGVSS DALNFSEQNG GAFPVNEVGG TFNPVRNSFN CGDKLMFDQM  120
DTQYGFSMDL NDANGLATAQ NNCSIPQNSV FDMENCMIPR PLSMSVDEKM LKSLSLFKAS  180
SGGGILAQVW VPMRLGDQHI LSTCEQPYLL DEMLAGYREI SRSFIFPTER RSGSFLGLPG  240
RVFTSKVPEW TSNVSYYNKV EYLRADHAAQ HEVRGSIAVP VFDSPEMSCC AVLELVTTKE  300
KTNFNAELET VCNALQAVNL RTTEPPRIRP QCLSKNQRAA LAEIIDVLRA VCHAHRLPLA  360
LTWIPCYYTE GDGDEMTRVR VREGNTNSNE KCILCIEETA CYVNDRTMEG FVYACVEHHL  420
EEGQGIAGKA LQSNHPFFYA DVKNYDISEY PLVHHARKFG LNAAVSIRLR STYTGEDDYI  480
LELFLPVNMK GSAEQQLLLN NLSGTMQRIC KSLRTVSDAE LFGVEGSKVA FQKEENQNFP  540
LMAMPGENSQ LTLSDNDVNS TKKMSLEVSN TRNDIIEPDS LHKQATSGSR RHEKKRSTAE  600
KNVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV NRSLRKIQTV  660
LDSVQGVEGG LKFDPNTGEF MAAGSIIQET GSQKSLFPDK NLYVKNAELA TQNAVLVPSA  720
PGFDGMSSLI KLEEDDCSMG LNQVAPSRGK LNTNTCGEEL RKSNASLIDC SGNSQLVSIN  780
AVPCQQASLE TTSQASPENV SLGSYLVNRG EKYGLNKGSL KLENSDCHFV SQSSLAAGDD  840
IDTGIDVDDG IVEHNQPSSS GMTDSSNGSS SMIRGSSSSS QSFEEQKYSK VKTSCVDSGS  900
KIIVKATYRE DTIRLKFEPS AGCFQLYEEV GKRFKLQNGT FQLKYLDDEE EWVMLVTDSD  960
LQECLEILDD IGTRSVKLLV RDMPCSMNSS GSSNCFLTGG L

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023921422.1	0.0	protein NLP8-like
Refseq	XP_023921423.1	0.0	protein NLP8-like
Refseq	XP_023921424.1	0.0	protein NLP8-like
Refseq	XP_023921425.1	0.0	protein NLP8-like
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A2N9GI74	0.0	A0A2N9GI74_FAGSY; Uncharacterized protein
STRING	EOY04774	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]