PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01210-augustus-gene-0.34-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 269aa    MW: 30293.1 Da    PI: 8.0893
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01210-augustus-gene-0.34-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-181360148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   rg W++eEde+lv++++ +G g+W+++++  g+ R++k+c++rw +yl
  maker-scaffold01210-augustus-gene-0.34-mRNA-1 13 RGLWSPEEDEKLVNYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
                                                   788*******************************************97 PP
2Myb_DNA-binding51.13.1e-1666109146
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                                    rg+++ +E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
  maker-scaffold01210-augustus-gene-0.34-mRNA-1  66 RGSFSSQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                                                    899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.984860IPR017930Myb domain
SuperFamilySSF466891.01E-2910107IPR009057Homeodomain-like
SMARTSM007179.5E-131262IPR001005SANT/Myb domain
PfamPF002493.3E-161360IPR001005SANT/Myb domain
CDDcd001672.13E-111660No hitNo description
PROSITE profilePS5129425.36161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2564115IPR009057Homeodomain-like
SMARTSM007173.2E-1565113IPR001005SANT/Myb domain
PfamPF002491.6E-1466109IPR001005SANT/Myb domain
CDDcd001672.22E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLVNYITT HGHGSWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS SQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLAQGL  120
DPNTHNLLPS HKTNNIHDNG CNFSHSNPKP TSLFSVNSQM TDASVNMNTP FSTLLSFPPT  180
DNNFSSPTIP IYELLNPNAV WTNQEQNPSS LMGSASSVSS SLLNPSGFDS VQENCMWNGS  240
FQPMEITKQD EMLQPEQQTL DSTVLINFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32131157108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4478112e-84AM447811.1 Vitis vinifera contig VV78X161411.10, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900538.10.0transcription factor MYB86-like isoform X1
TrEMBLA0A2N9H3N01e-149A0A2N9H3N0_FAGSY; Uncharacterized protein
STRINGEMJ145771e-102(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.15e-88myb domain protein 67