PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | maker-scaffold01188-augustus-gene-0.31-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 23945.2 Da PI: 7.6158 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.8 | 2.6e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredams 59 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++ ++++++e++r+++++ maker-scaffold01188-augustus-gene-0.31-mRNA-1 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMAFISNVSESQRPALFQ 65 6*************************************************************** PP DUF260 60 slvyeAearardPvyGavgvilklqqqleqlkaelall 97 sl++eA+ r+ +Pv+Gavg++++++++++q+++e++l+ maker-scaffold01188-augustus-gene-0.31-mRNA-1 66 SLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLR 103 ********************************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.788 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMA FISNVSESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLTAGATI 120 PASDEVSEAE VTCTNMWNLG DPSPNSRAKV SPKRRRSGDQ NKPYQTDLDL CLTPAKVSVY 180 NPEIRRPGTP SMNSEESVTT FESGFADQYG ERKLLNLFN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB555698 | 2e-71 | AB555698.1 Castanea crenata DNA, microsatellite marker PRD34. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_023922590.1 | 1e-151 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 2e-83 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2N9FHF5 | 1e-132 | A0A2N9FHF5_FAGSY; Uncharacterized protein | ||||
STRING | XP_002525255.1 | 1e-117 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 1e-85 | LOB domain-containing protein 38 |