PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01164-augustus-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 867aa    MW: 94345.7 Da    PI: 6.952
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01164-augustus-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.23.1e-096166531954
                                                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                    Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  maker-scaffold01164-augustus-gene-0.31-mRNA-1 616 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 653
                                                    664459******************************88 PP
2BELL96.32.6e-314885471372
                                           BELL  13 lslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                                    l l + Vd+rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  maker-scaffold01164-augustus-gene-0.31-mRNA-1 488 LFLSHVVDRRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 547
                                                    578999***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-53425545IPR006563POX domain
PfamPF075261.6E-34430544IPR006563POX domain
PROSITE profilePS5007112.568594657IPR001356Homeobox domain
SMARTSM003891.2E-9597661IPR001356Homeobox domain
CDDcd000863.80E-13597658No hitNo description
SuperFamilySSF466894.71E-17599664IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28600663IPR009057Homeodomain-like
PfamPF059204.5E-18614653IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MLYLSLPVLL CWQVKLGVFL SVSARLKTKA RDDDDDEEEY SDMGLVTPPL PPVISQYSKT  60
HHSIPIPEKS NNSTNSMSQE YHHHHHQPGI FSFSNGFERS AVAHQDQQQQ QQHHIAQQIR  120
RDKLRVQGFE APPSPLVGID DEESGGLQVY ETAGMLSEMF NFPQPGAATT ATASAELLDQ  180
PLTQSYHRIP RPQQPGVGVA NEWYGNRQGM VVGLGPLGDS KNQTSVNSRD SLSHQSQPQH  240
HHHHHAQISS INADSAAAMQ LFLMNPQPRS PSPPPPSQTA STSSTLHMLL PNPSSSLQGY  300
APAPHSAGAG GGGYGQFSWV PDHEPGGSTA TQLNNPSEIG GVVESQGLSL SLSSSLQHLE  360
AAKAEELRMG DAGMLYYNQS GGASSSTHPY YKNLGGGHSH SNQSLHLQGV AQNHHQVHVG  420
FGSSLGVVNV LRNSKYAKAA QELLEEFCSV GRGQFKKNKF GRQNSTTNPN SNPEGAVSIS  480
KSVALTHLFL SHVVDRRYNH YCEQMQMVVN SFDLVMGFGA AVPYTALAQK AMSRHFRCLK  540
DAISAQLKHS CELLGEKDGA GSSGITKGET PRLKMLEQSL RQQRAFHQMG MMEQEAWRPQ  600
RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR NQVSNWFINA RVRLWKPMVE  660
EMYQQETKEE DAPEEREKDS SSGLIAQTPT PTTTGTTTAS TTTTPTTTTT TTTPTGKRSD  720
INACESDPSL IAMNRQCFSE NQAKQQQPNT TTMANNNTTI ATTMSDVAAP VSQCFSTTHD  780
SDMQHNNSAS TTTHSHRAAM AAAEDTCRRG SVVAAEFGTI SGNADIGSTL IRFGTTAGDV  840
SLTLGLRHAG NMPEKSSSFS VRDFGGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16603661563Homeobox protein Meis2
3k2a_B2e-16603661563Homeobox protein Meis2
4xrm_A2e-16603661563Homeobox protein Meis2
4xrm_B2e-16603661563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886040.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-143BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A2N9IF150.0A0A2N9IF15_FAGSY; Uncharacterized protein
STRINGEOX912280.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-131BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]