PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01043-augustus-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family Dof
Protein Properties Length: 349aa    MW: 36528.5 Da    PI: 9.2254
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01043-augustus-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.5e-3974133362
                                         zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                                                    e+alkcprCds+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  maker-scaffold01043-augustus-gene-0.24-mRNA-1  74 ETALKCPRCDSSNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 133
                                                    7789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014474.45E-53544No hitNo description
ProDomPD0074788.0E-3257122IPR003851Zinc finger, Dof-type
PfamPF027011.8E-3276131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.63777131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVFSSLPAYL DPANWQQQQN HPTGTSSAAS SHLLPPPPPP PPPPQPHMGG GGAGSIRPGS  60
MADRARMANI PMPETALKCP RCDSSNTKFC YFNNYSLTQP RHFCKTCRRY WTRGGALRNV  120
PVGGGCRRNK RSKGSSSSKS PASSADRQSA SAGSASSIPS HSGAGDMIGL SSQVPQLRFM  180
SPLHQFTDFP SGEIGLNYGL NYGHPMSTPM GLAGDLNFHL GNALGGSGGG GGGSSHGSLL  240
SAGGVEQWRL QQTQQFPFLG GLDPSPGFFE SGVDAASGYV GASQGRAKQS NSVAAQMASV  300
KMEDNQELNL SRQFLGIQAG NEQYWNGNTT AWTDLSGFSS SSTATSNPL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00295DAPTransfer from AT2G37590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919195.10.0dof zinc finger protein DOF2.4-like
TrEMBLA0A2N9IPR21e-164A0A2N9IPR2_FAGSY; Uncharacterized protein
STRINGEOY075471e-125(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.15e-45DNA binding with one finger 2.4