PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01035-augustus-gene-0.33-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CO-like
Protein Properties Length: 389aa    MW: 43659.8 Da    PI: 6.6393
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01035-augustus-gene-0.33-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.32.7e-072164239
                                       zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                                   ++r C+ ++e  + l+C+ ++  lC  C  e H+       Ht+
  maker-scaffold01035-augustus-gene-0.33-mRNA-1 21 QKRLCDYCSEATALLYCRADSAKLCFLCDREVHSTnqlfskHTR 64
                                                   6789*****************************66788888886 PP
2zf-B_box24.94.2e-0865108341
                                       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                                                     r C+ +++ ++++fC + ++ lC++C  e H +      H+++p
  maker-scaffold01035-augustus-gene-0.33-mRNA-1  65 SRLCDSCDSSPASIFCSTECSVLCQNCDWERH-SlslshvHNRRP 108
                                                    689****************************9.658887777766 PP
3CCT61.42.9e-21340382143
                                            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                                                    R+ al+RYkeK+ktR++eK+irYesRK++AesR R+KGrF+k 
  maker-scaffold01035-augustus-gene-0.33-mRNA-1 340 RDSALSRYKEKKKTRRYEKHIRYESRKVRAESRIRIKGRFAKM 382
                                                    899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.3672067IPR000315B-box-type zinc finger
SMARTSM003363.9E-132067IPR000315B-box-type zinc finger
PfamPF006437.4E-62164IPR000315B-box-type zinc finger
CDDcd000211.74E-62367No hitNo description
PROSITE profilePS5011910.53763109IPR000315B-box-type zinc finger
PfamPF006437.7E-665108IPR000315B-box-type zinc finger
CDDcd000219.31E-666109No hitNo description
SMARTSM003360.4368109IPR000315B-box-type zinc finger
PfamPF062031.7E-15340382IPR010402CCT domain
PROSITE profilePS5101714.604340382IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MTDSQAQIKK QHQNIMSPHI QKRLCDYCSE ATALLYCRAD SAKLCFLCDR EVHSTNQLFS  60
KHTRSRLCDS CDSSPASIFC STECSVLCQN CDWERHSLSL SHVHNRRPLE GFTGCPSVNE  120
LLGIVGYEET GHKALFLKDE STGGGDGFDG LSDFLVWDTP CAVSLDALIS STSSEHDFQA  180
MGVPPLPKNR NAACGQYKDE IINQLRELVK LEPKLNCENV DAEPLSGFQP LLSEQNVQQG  240
DMLTGFAHNA EPFVFPRFEA SAFQCCTDSG EAANHFFLPN SSTRSYLEES HVVPDKHSDI  300
SCSVPHSNDG CEGHSQYPIK SETSSTFQRV ASHELNSQER DSALSRYKEK KKTRRYEKHI  360
RYESRKVRAE SRIRIKGRFA KMDTAGRQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023908888.10.0zinc finger protein CONSTANS-LIKE 13 isoform X2
SwissprotO822564e-99COL13_ARATH; Zinc finger protein CONSTANS-LIKE 13
TrEMBLA0A2N9ECH00.0A0A2N9ECH0_FAGSY; Uncharacterized protein
STRINGEMJ022771e-162(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-89B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]