PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01005-snap-gene-0.44-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 292aa    MW: 32558.2 Da    PI: 6.6577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01005-snap-gene-0.44-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-103577246
                                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                            Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                               g +T+ Ed  +  +++  G++ W+ Ia+ ++ gRt++++k++w++
  maker-scaffold01005-snap-gene-0.44-mRNA-1 35 GEFTENEDRVICGLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 77
                                               789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-111340IPR009057Homeodomain-like
SuperFamilySSF466894.11E-211383IPR009057Homeodomain-like
PROSITE profilePS500904.0771528IPR017877Myb-like domain
PROSITE profilePS5129420.1822983IPR017930Myb domain
SMARTSM007173.3E-83381IPR001005SANT/Myb domain
PfamPF002492.3E-93577IPR001005SANT/Myb domain
CDDcd001672.56E-63679No hitNo description
Gene3DG3DSA:1.10.10.607.1E-184180IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGLEGIGLLF HRKQRCGKSC RLRWLNYLRP NIKHGEFTEN EDRVICGLFA NIGSRWSIIA  60
AQLPGRTDND IKNYWNTKLK KKLMGIFPPS QRKAHQAATL SSLLQTSSSS SISPTSSYKG  120
YNSASSFTDL EFASSLLSSN NCCTNAAAAA PVLQAQENFV GPPQNYQIKD NLLMFGSEAS  180
CSSSDGSSNN LINHGNGERE YEYGGNYGEV QMGGLQQSFL YNGNIDGNQR FMISNGDGDV  240
NGNWIQKQNG MWNDHPLDYG LEEIKQLIST SNCNNFLFDE NKTDQEKQMM FY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19118336108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023920664.11e-178transcription factor RAX2 isoform X1
TrEMBLA0A2N9GLH71e-104A0A2N9GLH7_FAGSY; Uncharacterized protein
STRINGPOPTR_0006s12530.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.17e-40myb domain protein 36