PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold01003-augustus-gene-0.45-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bZIP
Protein Properties Length: 468aa    MW: 50789 Da    PI: 9.4149
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold01003-augustus-gene-0.45-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.75.2e-23323385163
                                                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                                                    e+elkrerrkq+NRe+ArrsR+RK+ae+eeL+ kv++L+aeN a k+e+e+l+++++klk e+
  maker-scaffold01003-augustus-gene-0.45-mRNA-1 323 ERELKRERRKQSNRESARRSRLRKQAETEELAHKVETLTAENGAIKSEIEQLTDNSEKLKLEN 385
                                                    89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077778.6E-7145IPR012900G-box binding protein, multifunctional mosaic region
PfamPF077773.0E-2355113IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.5E-26171302No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-18317382No hitNo description
SMARTSM003387.4E-22323387IPR004827Basic-leucine zipper domain
PfamPF001701.2E-21323385IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.024325388IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.94E-11326382No hitNo description
CDDcd147024.04E-20328375No hitNo description
PROSITE patternPS000360330345IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGNNEEGKPT KSEKQSSPAR LDQTNQTNVH VYPDWAAMQF FKEMLIVLQT NPFYIQAYYG  60
PRVAIPPYYN STMASGHAPH PYMWGTPQPM MPPYGAPYAA IYPHGGLYAH PAVTLGSHSH  120
GQGVPLSPAD RQKKIVCVRC PLINFGFNYG AMKQAVTPMS IETPTKSGNT DRGLMKKLKE  180
FDGLAMSIGN GTAESLEGGA EHRLSQSAET EGSSDGSDGN TAKANQTRRK RSREETPTTG  240
IGGKTETQAS PVTSKEVNTA SNKVLGAAVT PASVTVNLVG NVVSPGMTTL EFRNTPNANT  300
KTTTPSVPQS CTVLPSEGWP QNERELKRER RKQSNRESAR RSRLRKQAET EELAHKVETL  360
TAENGAIKSE IEQLTDNSEK LKLENATLME KLKKAQLGHR EEIILNSIGG KRTLPVSTEN  420
LLSRVNNSGS IGISIEEKSD MYDKNSNSGA KLHQLLDASP RADAVAAG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1339345RRSRLRK
2339346RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF4281351e-129JF428135.1 Corylus heterophylla bZIP78 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875510.10.0common plant regulatory factor 1-like isoform X1
RefseqXP_023875511.10.0common plant regulatory factor 1-like isoform X1
RefseqXP_023875512.10.0common plant regulatory factor 1-like isoform X1
RefseqXP_023875513.10.0common plant regulatory factor 1-like isoform X1
SwissprotQ990891e-135CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A2I4F8E00.0A0A2I4F8E0_JUGRE; common plant regulatory factor 1-like isoform X2
STRINGEMJ192540.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-106G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]