PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00988-snap-gene-0.41-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

G2-like

Protein Properties

Length: 313aa MW: 34058.5 Da PI: 6.838

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00988-snap-gene-0.41-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.3	3.6e-33	43	97	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl maker-scaffold00988-snap-gene-0.41-mRNA-1 43 KPRLRWTAELHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLFHLKSHLQKYRL 97 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.058	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-32	40	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-23	43	98	IPR006447	Myb domain, plants
SuperFamily	SSF46689	5.73E-17	43	99	IPR009057	Homeodomain-like
Pfam	PF00249	8.8E-8	45	96	IPR001005	SANT/Myb domain
Pfam	PF14379	2.7E-15	140	185	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MYPRMIQPHH EGIVVGQEEI AIQSGGGSNH RGDPCLVLTS DPKPRLRWTA ELHERFVDAV 60 TQLGGASKAT PKAIMRTMNV KGLTLFHLKS HLQKYRLGKQ SGKEMGEASR DGMSSAYLLE 120 SPGTGNSSPN LPTSDNEGYE VKEALRAQME VQSKLHLQVE AEKHLQIRQD AERRYMAMLE 180 RACKMLADQF IGGSVIDTDS NGQGLVSKTP RNSSIDPLGF YCLHSPEVAG VHGSEEEVAP 240 SLHAQRADCS TESCLTSHES PGGLTLEGSP CGGKRRMLGM DSNTASLFWE AKMKSQDINV 300 AQVNAHAITG YGM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-19	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-19	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	3e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	43	99	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-19	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-19	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-19	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-19	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-19	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-19	43	99	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023903823.1	0.0	uncharacterized protein LOC112015623
Swissprot	Q94A57	1e-62	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2N9FSG6	0.0	A0A2N9FSG6_FAGSY; Uncharacterized protein
STRING	XP_008224659.1	1e-173	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6618	33	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	6e-65	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]