PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00987-augustus-gene-0.34-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 206aa MW: 22513.5 Da PI: 6.2258 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.3 | 1.1e-42 | 41 | 140 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvye 64 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++r da+ss+vye maker-scaffold00987-augustus-gene-0.34-mRNA-1 41 PCAACKILRRRCAEKCVLAPYFPPTEPTKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYE 104 7*************************************************************** PP DUF260 65 AearardPvyGavgvilklqqqleqlkaelallkee 100 A ar+rdPvyG++g i +lq+q+++l+a+la++++e maker-scaffold00987-augustus-gene-0.34-mRNA-1 105 AGARIRDPVYGCAGAICQLQKQVNELQAQLAKAQAE 140 ********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.313 | 40 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-42 | 41 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MECSDTNTNS TTSSTPFSHS PSSSSSPSPS PPRTPPIVIS PCAACKILRR RCAEKCVLAP 60 YFPPTEPTKF TIAHRVFGAS NIIKFLQDLP ESQRADAVSS MVYEAGARIR DPVYGCAGAI 120 CQLQKQVNEL QAQLAKAQAE LVNMQCQQAN LVALICMEMS QSPQATVQQS LESNFITSTP 180 SSYQNNPCFL NEDNNPCLLW DHPVWT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 34 | 148 | 4 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 34 | 148 | 4 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023912894.1 | 1e-117 | LOB domain-containing protein 1-like | ||||
Swissprot | Q9LQR0 | 2e-74 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2N9FRZ1 | 1e-101 | A0A2N9FRZ1_FAGSY; Uncharacterized protein | ||||
STRING | AES67410 | 1e-95 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 4e-63 | LOB domain-containing protein 1 |