PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00938-snap-gene-0.35-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | TCP | ||||||||
Protein Properties | Length: 442aa MW: 49069 Da PI: 6.6148 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.1 | 9.1e-36 | 146 | 259 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.... 65 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l+++ maker-scaffold00938-snap-gene-0.35-mRNA-1 146 TGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLAELppwh 213 79**************************************************************9888 PP TCP 66 ..............ssssaseceaesssssasnsssg................k 89 + a+s + + +++s++ + maker-scaffold00938-snap-gene-0.35-mRNA-1 214 ptgtstgtaaepdpN--------AGSAEMTIAEQSESsgynfqlhrqlgenpdE 259 887765443332221........2222222222222222222222333333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.0E-32 | 146 | 231 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.172 | 148 | 206 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MSLCGFCIYL TYWGEESGDY NGRGFLGSAA TVAPLSELNQ KARNLDFQRN QQHLLRPIRQ 60 VTTPIQQQPQ EQNLGTYNTH YQNLQLVQNQ QQLQQQPYGD AINSNQTEPQ VLDQTTDYAK 120 HRQKMGMKST GGEIVQVQGG HIVRSTGRKD RHSKVYTAKG PRDRRVRLSA HTAIQFYDVQ 180 DRLGYDRPSK AVDWLIKKAK SAIDKLAELP PWHPTGTSTG TAAEPDPNAG SAEMTIAEQS 240 ESSGYNFQLH RQLGENPDEN STFIPPALDS ETITDTMKSL FPTSSANSSI NFQSYPPDLI 300 SRNSNHPQDL GLSLHSFQDH SAPADQNLFV GSAPMGFDTN YQRMVAWNND TSAENRGGFV 360 FNSQALSQQA LLGQGSAFSQ RGPLQSSFAH SVRAWDHDLS IASTDHQKSQ PIHHSSIFGS 420 RFTTDGLTGF CIPARIQGEE EQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-22 | 153 | 206 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 8e-22 | 153 | 206 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023928745.1 | 0.0 | transcription factor TCP4-like | ||||
Refseq | XP_023928746.1 | 0.0 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 8e-79 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A2N9J279 | 0.0 | A0A2N9J279_FAGSY; Uncharacterized protein | ||||
STRING | cassava4.1_011082m | 1e-157 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 5e-78 | TCP family protein |