PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00916-snap-gene-0.38-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

CAMTA

Protein Properties

Length: 912aa MW: 103058 Da PI: 7.8927

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00916-snap-gene-0.38-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	165.3	1e-51	29	142	5	118
CG-1 5 kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhek 72 +rwl+++ei+aiL n++++++ ++ + pksg+l+L++rk++r+frkDG++wkkkkdgktv+E+he+ maker-scaffold00916-snap-gene-0.38-mRNA-1 29 GTRWLRPNEIHAILCNYKNFSINVKPVNLPKSGTLVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEH 96 68**************************************************************** PP CG-1 73 LKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118 LKvg e +++yYah+++nptf rrcywlL+++le+ivlvhy+e++ maker-scaffold00916-snap-gene-0.38-mRNA-1 97 LKVGDEERIHVYYAHGQDNPTFVRRCYWLLDKSLEHIVLVHYRETQ 142 *****************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.221	21	147	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.7E-74	24	142	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.4E-46	28	140	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	4.48E-13	359	445	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	6.4E-14	562	663	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	4.82E-15	562	662	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.2E-6	565	629	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.35E-12	565	659	No hit	No description
PROSITE profile	PS50297	14.424	567	671	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	2.2E-4	600	629	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.579	600	632	IPR002110	Ankyrin repeat
SMART	SM00015	220	710	732	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	4.78E-5	759	834	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	64	763	785	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.163	764	793	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.4E-4	786	808	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.109	787	811	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.3E-4	788	808	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	11	866	888	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	4.78E-5	866	892	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	8.242	868	896	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence Send to blast
MEGQLVGSEI HGFHTLHDLD LGNIREEAGT RWLRPNEIHA ILCNYKNFSI NVKPVNLPKS 60 GTLVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG DEERIHVYYA HGQDNPTFVR 120 RCYWLLDKSL EHIVLVHYRE TQEGSPGTPV NSNSSSGSSA PWLLTDELDS GGNHAHYGES 180 AGTVQNHELR LHEINTLEWD DLLLTNDLNN SIVPKGAKVS SIDQTNQALN DSLHYGVSNS 240 SAEVSSLSNL TEAIAGSDNI YSSFPVSIYD QAMKGQLNAN VPRRDSITMG TNDSLDILVN 300 DGLQSQDSFG RWINQIIAGS PGSVDDSVLE SSISSGHGSF ISSMTDHSQS SVPEQIFSIT 360 DVSPAWAFLT EKTKIIVIGF FHKEYLHLAN SSLLCVCGDV CVPAETVQVG VYRCFVLPHS 420 SGFVNLFMSF DGHKPISQVL NFEYRIPSSV DPKNSLEEKF KWEDFQYQLR LAYLLFSSSK 480 NLNILSNKVS PNSLKEAKNF AHKTSNILHS WEKFIKSVED NKVPFPQAKD ILFELTLKNR 540 LKEWLLERVV ERPKTTERSK ATEYDAQGLG VIHLCAILGY TWAVPLFSCS GLSLDFRDKY 600 GWTALHWAAF CGREKMVASL LSGGAKPNLV TDPTPKNPGG STAADLASLK GYDGLAAYLS 660 EKALVEQFKD MSIAGNISGS LDTSATDTVI TENLSEDQIY LKDTLAAYRT TAEAAARIQA 720 AFRDHSLKVR TKEVEFSAPE DEARNIIAAM KIQHAFRNFE SKKKMAAAAR IQYRFRTWKI 780 RKDFLNMRRH AIKIQAAFRG FQVRRQYRKI LWSVGVLEKA VLRWRLKRRG FRGFQVDPME 840 PVPDQRPESD TEEDFYRTSR KQAEERVERS VVRVQAMFRS KKAQEEYRRM KMTHNQARLE 900 YEGFLDSDTD MT

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence Send to blast

MEGQLVGSEI HGFHTLHDLD LGNIREEAGT RWLRPNEIHA ILCNYKNFSI NVKPVNLPKS  60
GTLVLFDRKM LRNFRKDGHN WKKKKDGKTV KEAHEHLKVG DEERIHVYYA HGQDNPTFVR  120
RCYWLLDKSL EHIVLVHYRE TQEGSPGTPV NSNSSSGSSA PWLLTDELDS GGNHAHYGES  180
AGTVQNHELR LHEINTLEWD DLLLTNDLNN SIVPKGAKVS SIDQTNQALN DSLHYGVSNS  240
SAEVSSLSNL TEAIAGSDNI YSSFPVSIYD QAMKGQLNAN VPRRDSITMG TNDSLDILVN  300
DGLQSQDSFG RWINQIIAGS PGSVDDSVLE SSISSGHGSF ISSMTDHSQS SVPEQIFSIT  360
DVSPAWAFLT EKTKIIVIGF FHKEYLHLAN SSLLCVCGDV CVPAETVQVG VYRCFVLPHS  420
SGFVNLFMSF DGHKPISQVL NFEYRIPSSV DPKNSLEEKF KWEDFQYQLR LAYLLFSSSK  480
NLNILSNKVS PNSLKEAKNF AHKTSNILHS WEKFIKSVED NKVPFPQAKD ILFELTLKNR  540
LKEWLLERVV ERPKTTERSK ATEYDAQGLG VIHLCAILGY TWAVPLFSCS GLSLDFRDKY  600
GWTALHWAAF CGREKMVASL LSGGAKPNLV TDPTPKNPGG STAADLASLK GYDGLAAYLS  660
EKALVEQFKD MSIAGNISGS LDTSATDTVI TENLSEDQIY LKDTLAAYRT TAEAAARIQA  720
AFRDHSLKVR TKEVEFSAPE DEARNIIAAM KIQHAFRNFE SKKKMAAAAR IQYRFRTWKI  780
RKDFLNMRRH AIKIQAAFRG FQVRRQYRKI LWSVGVLEKA VLRWRLKRRG FRGFQVDPME  840
PVPDQRPESD TEEDFYRTSR KQAEERVERS VVRVQAMFRS KKAQEEYRRM KMTHNQARLE  900
YEGFLDSDTD MT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023895392.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2N9EZA3	0.0	A0A2N9EZA3_FAGSY; Uncharacterized protein
STRING	GLYMA07G37090.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]