PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00870-augustus-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family ARR-B
Protein Properties Length: 999aa    MW: 112207 Da    PI: 5.4566
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00870-augustus-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.43.2e-23207260155
                                        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                                    kp+l Wt+eLH+rF++a++ L G+++A Pk+il+ m+ +gL  e++ SHLQkYRl
  maker-scaffold00870-augustus-gene-0.31-mRNA-1 207 KPKLTWTNELHDRFLQAIKVL-GIDRAHPKKILKYMNTPGLKKENISSHLQKYRL 260
                                                    79*******************.********************************8 PP
2G2-like55.61.2e-17684736154
                                        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                                                    kp l W++eLH+rF +a + L G++ A Pk+i ++m+ +gL +e++ SHLQ+Y 
  maker-scaffold00870-augustus-gene-0.31-mRNA-1 684 KPNLMWNNELHNRFPQAFNVL-GIDTAHPKKIIQHMNAPGLKRENISSHLQRYH 736
                                                    6899*****************.*******************************7 PP
3Response_reg48.93.7e-17241301108
                                                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHH CS
                                   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellk 63 
                                                    +l+vd +p+ + ++ ++l + gy +v +a+ +++al++++e+d  +l++    +p+md +e+l+
  maker-scaffold00870-augustus-gene-0.31-mRNA-1  24 ILVVDCDPTCLTIISEMLCRFGY-KVVTAKRASDALAIAREEDdLQLVMAEAHLPDMDKYEFLE 86 
                                                    89*********************.***************88888******************** PP

                                                    HHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
                                   Response_reg  64 eireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                                                    ++ e + klp+++++a ++e+++l  l  Ga  +l Kp+  +++ 
  maker-scaffold00870-augustus-gene-0.31-mRNA-1  87 RMGEMS-KLPVVIMSADDNENTVLGSLFKGAALYLIKPITLNDMK 130
                                                    **9988.9*******************************999886 PP
4Response_reg57.95.7e-205076131108
                                                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHH CS
                                   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellk 63 
                                                    vl+vd + + + ++ ++l++ gy +v +a++g++al+++++kd  +l+l+   +p+md +e+l+
  maker-scaffold00870-augustus-gene-0.31-mRNA-1 507 VLVVDGDSTCLTIISKMLSRFGY-KVVTAKQGSDALAIARDKDdLQLVLTEAHLPDMDKYEFLE 569
                                                    89*********************.***************88888******************** PP

                                                    HHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHH CS
                                   Response_reg  64 eireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelv 108
                                                    +++e + klp+i+++a ++e+ +l  l  Ga  +l+Kp+  +++ 
  maker-scaffold00870-augustus-gene-0.31-mRNA-1 570 RMQEVS-KLPVIFMSADDSEKAMLGSLFKGAVLYLVKPITLNDMK 613
                                                    ****99.********************************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.1E-2520173No hitNo description
SuperFamilySSF521728.4E-2420137IPR011006CheY-like superfamily
SMARTSM004482.3E-1322133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.6123137IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-1324131IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.52E-1625137No hitNo description
SuperFamilySSF466891.25E-16205264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-23206264IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-21207260IPR006447Myb domain, plants
PfamPF002491.2E-5210259IPR001005SANT/Myb domain
SuperFamilySSF521721.05E-25503620IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-27505671No hitNo description
SMARTSM004481.1E-18505616IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.057506620IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-15507614IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.57E-20508620No hitNo description
SuperFamilySSF466892.78E-13682740IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-18683738IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-14684736IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 999 aa     Download sequence    Send to blast
MNNEKSISIE SIRNSSSLPK GISILVVDCD PTCLTIISEM LCRFGYKVVT AKRASDALAI  60
AREEDDLQLV MAEAHLPDMD KYEFLERMGE MSKLPVVIMS ADDNENTVLG SLFKGAALYL  120
IKPITLNDMK NLWQFAFMKN SEKTLVADGV SSVQGESSEE SASDEDTESR SFENRRKQSL  180
QKGKRIAPEE TEKDEEEENY DSSVLKKPKL TWTNELHDRF LQAIKVLGID RAHPKKILKY  240
MNTPGLKKEN ISSHLQKYRL SLKREQDAIL KTMIRDPTES SLTSYYPSST FNLQGLLQVS  300
NQQSSATSNQ PELGNDLQRN LSSQMHMPFH GSADFPNYID SSCSDPSNPT YRQLTPPVNQ  360
LDSTYPDSSY VGSWITSNEL AGFVQIGNSS GEKTLSGNMD YFGVDHIGFL SDTTQHEQLQ  420
QPYQPLPPPP QPPQEPEERD SFGVERGEID ELFDLLKDPN NMFNDEDLDD LWQSTSFVSS  480
VTSMNREKSI SVEPIHNSSS LPRDVSVLVV DGDSTCLTII SKMLSRFGYK VVTAKQGSDA  540
LAIARDKDDL QLVLTEAHLP DMDKYEFLER MQEVSKLPVI FMSADDSEKA MLGSLFKGAV  600
LYLVKPITLN DMKNLWQFAL MKKSDKTLAA DRISSGQGAL SEESVNQPFE NKKEQSHQKA  660
KRKAPEEMNK DEEEENYDSS VLKKPNLMWN NELHNRFPQA FNVLGIDTAH PKKIIQHMNA  720
PGLKRENISS HLQRYHLPLK CQQDAIQKTM IGESIGSSLG PYYPSSAFNS HGLHQFSNQQ  780
SVSTSYQPGF GNDLQRNLSS HMYKPFLGSA HFPNYVNSSL GSHYPSPAFN LHGLQFPNQQ  840
SASTSYQPEF VNDLRRNLSS HMYMPFVGSA HFPNYVDSSL GSYYPSSAFN LHGLQFSNQQ  900
STSTSYQPVL GNGLQRNLSG HIYMPFVGSA HIPNFIDSSC SNPSNPMHGQ LIPPGSQLGA  960
TRQEEAMFLD INLAFYMDSE IPEIWLKPWV KVWNPSKKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-17206264462ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023913790.10.0two-component response regulator ARR14-like
TrEMBLA0A2H5NPH31e-133A0A2H5NPH3_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006491000.11e-134(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145541114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-48response regulator 2