PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00852-augustus-gene-0.17-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 33736 Da PI: 7.3682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.7 | 3.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT Ed++l +++k++G g W+ +++ g++R++k+c++rw++yl maker-scaffold00852-augustus-gene-0.17-mRNA-1 14 RGAWTVLEDKILTEYIKLHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ maker-scaffold00852-augustus-gene-0.17-mRNA-1 67 RGNITRDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 110 7899******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.731 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-27 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.986 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.04E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MGRSPCCSKE GLNRGAWTVL EDKILTEYIK LHGEGKWRNL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TRDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NIGKKVQDHL 120 NHTSKRSNQV HTQEKQNHSV ERSAGGPAEA KIGSSCVVRT KATKCTKAVN VITSEQPIQL 180 DQHNQIIETK PEVAVQSSMV HHHDPVDFSQ FMLGENNPSN FMMDFEMEGN FISDFLDMDF 240 SQLPCFEDGG DSSSNTCDKG HSSPISDHTH LVSGDRLHGS NFQSMGPLIE SELDWLCD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023891575.1 | 0.0 | myb-related protein 308-like | ||||
Swissprot | Q38850 | 2e-60 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A2N9ETC3 | 1e-171 | A0A2N9ETC3_FAGSY; Uncharacterized protein | ||||
STRING | EOY27233 | 1e-119 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13540.1 | 8e-63 | myb domain protein 5 |
Publications ? help Back to Top | |||
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