PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00737-augustus-gene-0.36-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family TALE
Protein Properties Length: 637aa    MW: 70540.6 Da    PI: 7.097
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00737-augustus-gene-0.36-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-094334701954
                                                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                                    Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  maker-scaffold00737-augustus-gene-0.36-mRNA-1 433 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 470
                                                    554459******************************88 PP
2BELL111.45.2e-36302371372
                                           BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkd 66 
                                                    +e+++kk++L+s+l+eV++rY+qy++q+qtv+ sFe+vaglg+a+pY++lA ka+S+hFrcLk+
  maker-scaffold00737-augustus-gene-0.36-mRNA-1 302 AEIRSKKSRLISMLNEVYRRYRQYYQQMQTVVTSFECVAGLGNAAPYANLAIKAMSKHFRCLKN 365
                                                    799************************************************************* PP

                                           BELL  67 aiaeqi 72 
                                                    ai++q+
  maker-scaffold00737-augustus-gene-0.36-mRNA-1 366 AITDQL 371
                                                    ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-55235369IPR006563POX domain
PfamPF075261.5E-42240368IPR006563POX domain
PROSITE profilePS5007112.098411474IPR001356Homeobox domain
SMARTSM003893.4E-10414478IPR001356Homeobox domain
CDDcd000864.27E-13414475No hitNo description
SuperFamilySSF466895.99E-17416480IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27417478IPR009057Homeodomain-like
PfamPF059201.1E-18431470IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VIAQNHHHHH HHHQGGVVEH STANLQGLLP LYDPSLLSSD  60
LLTCTTTNTN THEFHHHHHH NQNPQLTEPG CKGSAVKEES VNLMGFVGGI MNGASSSSSA  120
YLDPNHSLPL NPNSIQDMNS NPFLFTPQSL QNLRDFDQSY NNGSEVVVFK PEPLSLSLSS  180
HHQPTHHQTN LPLELNLQRY GSSSGAGYVI PGIVNGSASA SNDVSRSSVP LGPFTGYASI  240
LKGSRFLKPA QQLLEEFCEV AGRGIYAEKV TADSALMDSP MESLSASGIV DDRDPLSCED  300
GAEIRSKKSR LISMLNEVYR RYRQYYQQMQ TVVTSFECVA GLGNAAPYAN LAIKAMSKHF  360
RCLKNAITDQ LQFNYKAHAT LGNDEAPRLG NADRGLYCQR PVHSSGFLEH QPVWRPQRGL  420
PERAVTVLRA WLFEHFLHPY PTDTDKLMLA KQTGLSRSQV SNWFINARVR LWKPMVEEIH  480
TLETRQAQKA SQRDERSANR SSDQLTSANS LVTDNPSTST QRAQDTPSKR TRNELPDIPV  540
GNEEPRNLSY NNFLSHPHHM GVGVSMAGGN SGVSLTLGLH QNNGIGISEP FPINAVQRFG  600
LGLETNGEGY VIGGFESHNR HFERDVMGGQ LLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A6e-16420478563Homeobox protein Meis2
4xrm_B6e-16420478563Homeobox protein Meis2
4xrs_A7e-16420477158Homeobox protein Meis1
4xrs_B7e-16420477158Homeobox protein Meis1
5bng_A7e-16420478159Homeobox protein Meis2
5bng_B7e-16420478159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023929390.10.0BEL1-like homeodomain protein 9
TrEMBLA0A2N9HVJ90.0A0A2N9HVJ9_FAGSY; Uncharacterized protein
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-110TALE family protein