PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00648-snap-gene-0.57-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | SBP | ||||||||
Protein Properties | Length: 319aa MW: 34788.6 Da PI: 9.033 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.2 | 8.4e-42 | 25 | 101 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakh 69 C v+gC++dls++++yhrrhkvCe hsk+p+v+++g+eqrfCqqCsrfh+l efDe+krsCr+rL++h maker-scaffold00648-snap-gene-0.57-mRNA-1 25 CLVDGCNSDLSKCRDYHRRHKVCELHSKTPKVTIRGQEQRFCQQCSRFHSLGEFDEGKRSCRKRLDGH 92 ******************************************************************** PP -----S--- CS SBP 70 nerrrkkqa 78 n+rrrk+q+ maker-scaffold00648-snap-gene-0.57-mRNA-1 93 NRRRRKPQP 101 ******997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.8E-35 | 18 | 86 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.146 | 22 | 99 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-39 | 23 | 104 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.7E-31 | 25 | 98 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MESSSSSGST KRARAPVNGT QVPLCLVDGC NSDLSKCRDY HRRHKVCELH SKTPKVTIRG 60 QEQRFCQQCS RFHSLGEFDE GKRSCRKRLD GHNRRRRKPQ PDSLSLNSGR FHSSYQGTRI 120 LSFTSPQIFP QGAVVSSPWT GAVKAESDAP VLYNSYSQLN YCDRKNSINP GSLCDNYKGG 180 KQFPFAQGSS SSLLGATISQ PLLDANFASS NDSRSQKVFS NGLNQVIDSD CALSLLSSTP 240 TETRQVGLSH MVQSNPIHTG QSLVPSLHYN GFGMEVKNSS ALGSSNTNIH CQGMFSIGPH 300 DSDGSSATGP NQTLSFLWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 22 | 98 | 8 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 98 | KRSCRKRLDGHNRRRRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM459992 | 7e-44 | AM459992.1 Vitis vinifera contig VV78X036999.6, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023870642.1 | 0.0 | squamosa promoter-binding-like protein 16 isoform X1 | ||||
TrEMBL | A0A2I4DIR6 | 1e-160 | A0A2I4DIR6_JUGRE; teosinte glume architecture 1-like | ||||
STRING | VIT_01s0010g03910.t01 | 1e-134 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2591 | 33 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 3e-53 | SBP family protein |