PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | maker-scaffold00535-augustus-gene-0.30-mRNA-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26471.6 Da PI: 5.497 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.7 | 1.9e-38 | 7 | 98 | 1 | 91 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeA 65 +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r+da++s+ yeA maker-scaffold00535-augustus-gene-0.30-mRNA-1 7 SCGACKFLRRKCTTECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRRDAANSISYEA 72 6************************978************************************** PP DUF260 66 earardPvyGavgvilklqqqleqlk 91 ar+rdP+yG+vg i++lqqql +++ maker-scaffold00535-augustus-gene-0.30-mRNA-1 73 LARVRDPIYGCVGDIFALQQQLTKSD 98 *********************98865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.252 | 6 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.5E-36 | 7 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MTGTGSSCGA CKFLRRKCTT ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN 60 RRDAANSISY EALARVRDPI YGCVGDIFAL QQQLTKSDTI YLALQVASLL EEIEVIGNQM 120 ANFAVGVANC GSSQATTNLY NGLQFSSQHD VISPFSSQHD VLSTQYYQNQ QAPLLFHAGS 180 TAANQGFDSQ MDIQLPPLYG WENQNLFDDS GLNPSGKLLE GIDEDNFKCY PWLYNSTNAK 240 N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 3 | 96 | 7 | 99 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 3 | 96 | 7 | 99 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023928452.1 | 1e-164 | LOB domain-containing protein 33-like | ||||
Swissprot | Q9LHS8 | 6e-51 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | A0A2N9IFG8 | 1e-139 | A0A2N9IFG8_FAGSY; Uncharacterized protein | ||||
STRING | VIT_13s0019g02060.t01 | 5e-95 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 9e-42 | LOB domain-containing protein 33 |
Publications ? help Back to Top | |||
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