PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00281-augustus-gene-1.10-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family SBP
Protein Properties Length: 391aa    MW: 42863.8 Da    PI: 8.5528
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00281-augustus-gene-1.10-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-4094170278
                                                    -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STT CS
                                            SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrr 65 
                                                    C v+gC++dls +++yhrrhkvCe hsk+p+v++ g++qrfCqqCsrfh+l+efDe+krsCr+r
  maker-scaffold00281-augustus-gene-1.10-mRNA-2  94 CLVDGCTSDLSICRDYHRRHKVCELHSKTPQVTICGQKQRFCQQCSRFHSLEEFDEGKRSCRKR 157
                                                    **************************************************************** PP

                                                    TT-------S--- CS
                                            SBP  66 Lakhnerrrkkqa 78 
                                                    L++hn+rrrk+q+
  maker-scaffold00281-augustus-gene-1.10-mRNA-2 158 LDGHNRRRRKPQP 170
                                                    **********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.3E-3287155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.37691168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-3792173IPR004333Transcription factor, SBP-box
PfamPF031102.4E-2994167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDWNLKAPPS WDLSELEQGA FPNIETVSGS SSFGDHRAQR GDFSVDLKLG QVGSSGNESV  60
NKWKEPGVSK MASPSSGSSK RARAANNGTQ PVSCLVDGCT SDLSICRDYH RRHKVCELHS  120
KTPQVTICGQ KQRFCQQCSR FHSLEEFDEG KRSCRKRLDG HNRRRRKPQP EPLSRPGNYL  180
SNYQGPQFIQ FSGTHVYPST TVMSPAWAGV LNTAADARLP NQQQQLQLLD KQKLYLGSSP  240
STSSYIGGGK QISFLQNSST PLNNQLSLEA PVCQPLLRTI ASESDGARRK MYCDRLTARV  300
HDSDCALSLL SSPQSQSSGH NLSHVMHPNS ASLVQPLGPS LHGDRTLEPM DSVLVSNGSG  360
NNVHCQGMFL MGSDGSQGNQ TPQNLPFHNW E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-28941671184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150167KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894488.10.0squamosa promoter-binding-like protein 13A
RefseqXP_023894489.10.0squamosa promoter-binding-like protein 13A
RefseqXP_023894490.10.0squamosa promoter-binding-like protein 13A
TrEMBLA0A2N9EB570.0A0A2N9EB57_FAGSY; Uncharacterized protein
STRINGXP_008239496.11e-175(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-78SBP family protein