PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00235-augustus-gene-0.27-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

HB-other

Protein Properties

Length: 956aa MW: 106102 Da PI: 9.2419

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00235-augustus-gene-0.27-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.7	6e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ ++++F + +s++e +e+++ g+t +qV+ +F +R++ +k maker-scaffold00235-augustus-gene-0.27-mRNA-1 69 KRPRDLLNPKAVKYMQSVFSIKDAISKKESREISALFGVTVTQVRDFFASQRTRVRK 125 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.782	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.54E-6	68	131	IPR009057	Homeodomain-like
SMART	SM00389	5.1E-4	68	130	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.2E-6	69	134	IPR009057	Homeodomain-like
CDD	cd00086	1.96E-4	69	125	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence Send to blast
MEVSRDDFSE LEIGTSVDSF TRFVDSQREL FHNQIDDLQR IVVTQCKLTG VNPLSQEMAA 60 GALSIKIGKR PRDLLNPKAV KYMQSVFSIK DAISKKESRE ISALFGVTVT QVRDFFASQR 120 TRVRKLVRLS REKAMRSSAC KELHDGALIS SDPMIPIDPV PLNSVGPASV EEAPSCSTQD 180 EALPGLDDED KHFVENIFNF MRKEETFSGQ VKLMEWILQI QNSSVLCWYL SNNFLRLVAS 240 SSTWLSQAAV EEQTSILLVI LKVLCHLPLH KALPVHMSAI LQSVNRLRFY RASGVFLCLV 300 TFAFSLSVSL SFLLTLYVVT LWIGIDFESS IGIIEFCLPF YVKLRSDISN RARVLLSRWS 360 KLLARSQAMK NPNGMKSPSD IQNDMMLKQR QVHVFTSYTC KICEIRRHSC SFVWKFREFK 420 LVTETRERRK VQLVEQPGQK MAGRSMQATR SAPLNQGRPM SADDIQKAKM RAQFMQSKYG 480 KNGSSNESKE SKTEGLNKPS TTQASTLNPV YKVPVRPNIE EQKKPVILPT KISSKVEAPL 540 DPKSRMDSKE PLWEKCRRVQ IQWQTPPGTS AFSSCWLFFA ISFYVLFLSA EIRLNDHWSV 600 GGGENSKEVE VQRNRNRREK ETIYQTVQEI PYNPKEPWDM EMDYDDTLTP QVPIEQPPDA 660 DSLETQVATN QVVNNAVSLA TPSSQVSSTA EPDLELLAVL LKNPELVFAL TSGQAGNLSS 720 EETVKLLDMI KAGGAGLAGS FNSGRAEEKV EVSLPSPTPS SNSGTSGWRP EVARNAFMQP 780 SSVANRVAYT SPGVATTSLM LPQATEANLI PPQQSSSMAQ QFAAAMHTYS LPQTTTNIPG 840 RQLPSLHPAR QTPASEMVLT SRNSSSMGAP LHNFSTTAAP SALQIESTSN IKPAHVSVTL 900 NTPGRAHASF PLQPTRSQTH SQSQHRSTIL VGFVNSGGGV GSFRLGMGFG MRTMLE

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence Send to blast

MEVSRDDFSE LEIGTSVDSF TRFVDSQREL FHNQIDDLQR IVVTQCKLTG VNPLSQEMAA  60
GALSIKIGKR PRDLLNPKAV KYMQSVFSIK DAISKKESRE ISALFGVTVT QVRDFFASQR  120
TRVRKLVRLS REKAMRSSAC KELHDGALIS SDPMIPIDPV PLNSVGPASV EEAPSCSTQD  180
EALPGLDDED KHFVENIFNF MRKEETFSGQ VKLMEWILQI QNSSVLCWYL SNNFLRLVAS  240
SSTWLSQAAV EEQTSILLVI LKVLCHLPLH KALPVHMSAI LQSVNRLRFY RASGVFLCLV  300
TFAFSLSVSL SFLLTLYVVT LWIGIDFESS IGIIEFCLPF YVKLRSDISN RARVLLSRWS  360
KLLARSQAMK NPNGMKSPSD IQNDMMLKQR QVHVFTSYTC KICEIRRHSC SFVWKFREFK  420
LVTETRERRK VQLVEQPGQK MAGRSMQATR SAPLNQGRPM SADDIQKAKM RAQFMQSKYG  480
KNGSSNESKE SKTEGLNKPS TTQASTLNPV YKVPVRPNIE EQKKPVILPT KISSKVEAPL  540
DPKSRMDSKE PLWEKCRRVQ IQWQTPPGTS AFSSCWLFFA ISFYVLFLSA EIRLNDHWSV  600
GGGENSKEVE VQRNRNRREK ETIYQTVQEI PYNPKEPWDM EMDYDDTLTP QVPIEQPPDA  660
DSLETQVATN QVVNNAVSLA TPSSQVSSTA EPDLELLAVL LKNPELVFAL TSGQAGNLSS  720
EETVKLLDMI KAGGAGLAGS FNSGRAEEKV EVSLPSPTPS SNSGTSGWRP EVARNAFMQP  780
SSVANRVAYT SPGVATTSLM LPQATEANLI PPQQSSSMAQ QFAAAMHTYS LPQTTTNIPG  840
RQLPSLHPAR QTPASEMVLT SRNSSSMGAP LHNFSTTAAP SALQIESTSN IKPAHVSVTL  900
NTPGRAHASF PLQPTRSQTH SQSQHRSTIL VGFVNSGGGV GSFRLGMGFG MRTMLE

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023891477.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A2I4FUX1	0.0	A0A2I4FUX1_JUGRE; homeobox protein LUMINIDEPENDENS isoform X2
STRING	EOX94988	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9809	29	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-142	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]