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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
maker-scaffold00227-augustus-gene-0.34-mRNA-1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
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| Family |
BBR-BPC |
| Protein Properties |
Length: 286aa MW: 31817.6 Da PI: 10.2293 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| maker-scaffold00227-augustus-gene-0.34-mRNA-1 | genome | THGP | View Nucleic Acid |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 345.3 | 1.4e-105 | 7 | 286 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalse.kkaavaerd.. 57
mddd+ + rn+gyyep+ +k +lglqlmss+a+rd+k r+ n + + ++a+++rd
maker-scaffold00227-augustus-gene-0.34-mRNA-1 7 MDDDALNMRNWGYYEPS--FKGHLGLQLMSSMADRDSKNflpgRDPNSMMVNpANGAYHPRDcv 68
9***9999*******99..********************9***8888876652688******99 PP
GAGA_bind 58 .......maflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslqql 114
+++ rd+++++ ++k+l++l+++ ++ vl++t+ ++slq+
maker-scaffold00227-augustus-gene-0.34-mRNA-1 69 vseapvpINY-VRDSWVNQ--------RDKFLNMLPTNP--------NYAVLPDTSGAHSLQM- 114
9988888888.88899888........789******655........4899************. PP
GAGA_bind 115 sepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkv 178
l+++ + e + i +++++ke +++kkrq a+ pk++kakk++k ++++
maker-scaffold00227-augustus-gene-0.34-mRNA-1 115 ----LQPPDLS--RDE--RVGRID-EPPVKKEGSQMKKRQGASAPKAPKAKKPRK----PRDNG 165
....4444443..222..223333.466677778888899999999999999999....45556 PP
GAGA_bind 179 kkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242
+++ +r+k kk++dlv+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+y
maker-scaffold00227-augustus-gene-0.34-mRNA-1 166 NASV--QRVKPAKKNMDLVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMY 227
6666..79******************************************************** PP
GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
PLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++n++DL++hWA+HGtnkfvtir
maker-scaffold00227-augustus-gene-0.34-mRNA-1 228 PLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANAIDLRTHWARHGTNKFVTIR 286
**********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MLLVVVMDDD ALNMRNWGYY EPSFKGHLGL QLMSSMADRD SKNFLPGRDP NSMMVNPANG 60
AYHPRDCVVS EAPVPINYVR DSWVNQRDKF LNMLPTNPNY AVLPDTSGAH SLQMLQPPDL 120
SRDERVGRID EPPVKKEGSQ MKKRQGASAP KAPKAKKPRK PRDNGNASVQ RVKPAKKNMD 180
LVINGIDMDI SGIPIPVCSC TGAPQQCYRW GCGGWQSACC TTNVSMYPLP MSTKRRGARI 240
AGRKMSQGAF KKVLEKLAAE GYNFANAIDL RTHWARHGTN KFVTIR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
