PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00215-augustus-gene-0.33-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 768aa    MW: 84529.6 Da    PI: 6.6655
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00215-augustus-gene-0.33-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.71.4e-1689152156
                                                    TT--SS--HHHHHHHHHH...HH.....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                       Homeobox   1 rrkRttftkeqleeLeel...Fe.....knrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                                    ++k +++t++q++eLe +   Fe     ++++p++++r eL++klgL+ +qVk+WFqNrR+++k
  maker-scaffold00215-augustus-gene-0.33-mRNA-2  89 KKKYHRHTPNQIQELEGYdssFEcsailECPHPDEKQRLELSRKLGLEIKQVKFWFQNRRTQMK 152
                                                    79999***********7544488999989********************************999 PP
2START120.72e-3831546471205
                                                    CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-E CS
                                          START  71 qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdw 123
                                                    +W+et++    +a+t++ is+g      galq+m aelq+lsp v+ R   f+Ry++q+ +g+w
  maker-scaffold00215-augustus-gene-0.33-mRNA-2 315 RWKETFPciiaRASTIDLISNGmagtknGALQVMHAELQVLSPFVSvRQLKFLRYCKQQAEGVW 378
                                                    7*************************************************************** PP

                                                    EEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE....EEEEEEE-EE--SSXXHHHHHH CS
                                          START 124 vivdvSvdseqkppesssvvRaellpSgiliepksngh....skvtwvehvdlkgrlphwllrs 183
                                                    ++vdvS+d   + ++ +++v +++lpSg+++++++n       +vtw+eh +++++ +h+l+++
  maker-scaffold00215-augustus-gene-0.33-mRNA-2 379 AVVDVSLDISLESTNMHPFVNCRRLPSGCVVQDMPNDTwcmqMQVTWIEHSEYNESGIHELYQP 442
                                                    *********999999************************8888********************* PP

                                                    HHHHHHHHHHHHHHHHTXXXXX CS
                                          START 184 lvksglaegaktwvatlqrqce 205
                                                    +++ g+ +ga++wvatlqrq e
  maker-scaffold00215-augustus-gene-0.33-mRNA-2 443 FIRAGMGFGAQRWVATLQRQSE 464
                                                    *******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-1873148IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1574154IPR009057Homeodomain-like
PROSITE profilePS5007114.30186154IPR001356Homeobox domain
SMARTSM003891.1E-1288158IPR001356Homeobox domain
CDDcd000866.55E-1689154No hitNo description
PfamPF000463.6E-1489152IPR001356Homeobox domain
PROSITE patternPS000270129152IPR017970Homeobox, conserved site
SMARTSM002345.2E-11247465IPR002913START domain
SuperFamilySSF559614.21E-18306464No hitNo description
CDDcd088751.13E-68309464No hitNo description
PROSITE profilePS5084826.686315468IPR002913START domain
PfamPF018521.0E-32315463IPR002913START domain
Gene3DG3DSA:3.30.530.204.0E-4342434IPR023393START-like domain
SuperFamilySSF559611.7E-19519762No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MTSGAFAPLP LLSTPPIPSS MHSSSTLTLS TSRKMEGQGG EMALIGENYD PGMVGRLRED  60
GYESRSGSDN VEGSGDDQEA GNDQGPAKKK KYHRHTPNQI QELEGYDSSF ECSAILECPH  120
PDEKQRLELS RKLGLEIKQV KFWFQNRRTQ MKTQLERHEN IILRQENDKL RAENALMRDA  180
MANPVCNSCG GPAIPGQISF EEHQLRIENA RLKDELNRIC ALANKFLGRP LSSLATSVPL  240
PSSTSGLELG VGRNGIGGLS SMGTPLPMGL DLGDGIMGAS AMPLIKPPMS FMGNEIPMDS  300
TITVAYSYSF LFIGRWKETF PCIIARASTI DLISNGMAGT KNGALQVMHA ELQVLSPFVS  360
VRQLKFLRYC KQQAEGVWAV VDVSLDISLE STNMHPFVNC RRLPSGCVVQ DMPNDTWCMQ  420
MQVTWIEHSE YNESGIHELY QPFIRAGMGF GAQRWVATLQ RQSEFLAILM SSTFPLEDHT  480
SISSLPDHFC TWINFVNFHI LIHHFFAALG PAGKRSMLKL AQRMTDKFCS GVCASTTHKW  540
DNLRLGNVSE NVRVMTRRNL DDPGEPHGIV VSAATSVWMP VSQQGLFDFL RDERSRSQWD  600
ILCVGRPIQE MIHIAKGQKQ GNCVSLLRGN VRNHFPYAQH SIPCNMLILQ ETWTDASGSV  660
VVYAPVDAPS INVVMGGGDS TYVALLPSGF SILPDDRSFF GVPQNCNGTV IKEDNNGSDG  720
SGGCLLTVGF QILINSQPAA KLTVESVETV NNLISCTIQK IKAALKIP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1602491e-81KJ160249.1 Quercus rubra microsatellite qru_CA3F17 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023885611.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A2N9HWB20.0A0A2N9HWB2_FAGSY; Uncharacterized protein
STRINGXP_008234278.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119234106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]